Functional clusters
Information
- Type InterPro
- Description Papain-like cysteine peptidase superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 5 | CH_aar_366 | 5 | 17 | 0.000358096 |
| Amborella trichopoda | AmTr_v1.0_scaffold00061 | 5 | CH_atr_40 | 9 | 9 | 5.2198e-19 |
| Brassica oleracea | C4 | 5 | CH_bol_503 | 9 | 49 | 0.0000274549 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_1379 | 8 | 74 | 0.000541132 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_1444 | 4 | 6 | 0.000716675 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_419 | 8 | 63 | 0.0000195558 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_84 | 9 | 13 | 0.0000000000000199301 |
| Carica papaya | supercontig_103 | 5 | CH_cpa_129 | 6 | 15 | 0.000000122284 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_645 | 8 | 77 | 0.000473399 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_49 | 17 | 19 | 1.1636e-33 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_559 | 6 | 7 | 0.0000000028581 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_413 | 5 | 10 | 0.00000953714 |
| Glycine max | Gm08 | 5 | CH_gma_978 | 4 | 8 | 0.000875918 |
| Gossypium raimondii | Chr12 | 5 | CH_gra_120 | 7 | 7 | 0.000000000000633682 |
| Lonicera japonica | GWHAAZE00000008 | 5 | CH_lonja_198 | 7 | 7 | 0.000000000000289827 |
| Magnolia biondii | Chr10 | 5 | CH_mbi_575 | 6 | 16 | 0.00000273799 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_290 | 4 | 4 | 0.00000430556 |
| Oryza sativa ssp. japonica | chr08 | 5 | CH_osa_93 | 8 | 11 | 0.000000000000186848 |
| Quercus lobata | 5 | 5 | CH_qlo_1739 | 4 | 10 | 0.000531271 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_651 | 5 | 17 | 0.000314778 |
| Tripterygium wilfordii | NC_052243.1 | 5 | CH_twi_151 | 6 | 9 | 0.0000000308534 |
| Aethionema arabicum | LG-4 | 6 | CH_aar_366 | 5 | 17 | 0.000358096 |
| Amborella trichopoda | AmTr_v1.0_scaffold00061 | 6 | CH_atr_40 | 9 | 9 | 5.2198e-19 |
| Brassica oleracea | C4 | 6 | CH_bol_503 | 9 | 49 | 0.0000274549 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_1379 | 8 | 74 | 0.000541132 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_1444 | 4 | 6 | 0.000716675 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_419 | 8 | 63 | 0.0000195558 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_84 | 9 | 13 | 0.0000000000000199301 |
| Carica papaya | supercontig_103 | 6 | CH_cpa_129 | 6 | 15 | 0.000000122284 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_645 | 8 | 77 | 0.000473399 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_49 | 17 | 19 | 1.1636e-33 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_559 | 6 | 7 | 0.0000000028581 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_413 | 5 | 10 | 0.00000953714 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_756 | 6 | 14 | 0.00004481 |
| Glycine max | Gm08 | 6 | CH_gma_978 | 4 | 8 | 0.000875918 |
| Gossypium raimondii | Chr12 | 6 | CH_gra_120 | 7 | 7 | 0.000000000000633682 |
| Lonicera japonica | GWHAAZE00000008 | 6 | CH_lonja_198 | 7 | 7 | 0.000000000000289827 |
| Magnolia biondii | Chr10 | 6 | CH_mbi_575 | 6 | 16 | 0.00000273799 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_290 | 4 | 4 | 0.00000430556 |
| Oryza sativa ssp. japonica | chr08 | 6 | CH_osa_93 | 8 | 11 | 0.000000000000186848 |
| Quercus lobata | 5 | 6 | CH_qlo_1739 | 4 | 10 | 0.000531271 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_651 | 5 | 17 | 0.000314778 |
| Tripterygium wilfordii | NC_052243.1 | 6 | CH_twi_151 | 6 | 9 | 0.0000000308534 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |