Functional clusters
Information
- Type InterPro
- Description Osmotin/thaumatin-like superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_96 | 4 | 9 | 0.000000139502 |
| Brassica carinata | ChrB02 | 5 | CH_bca_945 | 4 | 8 | 0.00000434375 |
| Brassica oleracea | C8 | 5 | CH_bol_629 | 3 | 4 | 0.000110811 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_258 | 4 | 5 | 0.000000135662 |
| Citrullus lanatus | CG_Chr01 | 5 | CH_cla_192 | 3 | 3 | 0.0000706418 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_157 | 4 | 4 | 0.0000000414516 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_522 | 3 | 3 | 0.0000371692 |
| Magnolia biondii | Chr13 | 5 | CH_mbi_646 | 3 | 3 | 0.0000103489 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_57 | 7 | 7 | 6.55032e-17 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_613 | 3 | 4 | 0.000221456 |
| Prunus persica | Pp05 | 5 | CH_ppe_58 | 9 | 10 | 1.27965e-21 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_364 | 5 | 9 | 0.000000000283 |
| Vigna mungo | CM024074.1 | 5 | CH_vmu_34 | 7 | 8 | 4.71822e-16 |
| Zea mays | 1 | 5 | CH_zma_268 | 4 | 8 | 0.00000818718 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_96 | 4 | 9 | 0.000000139502 |
| Brassica carinata | ChrB02 | 6 | CH_bca_945 | 4 | 8 | 0.00000434375 |
| Brassica oleracea | C8 | 6 | CH_bol_629 | 3 | 4 | 0.000110811 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_258 | 4 | 5 | 0.000000135662 |
| Citrullus lanatus | CG_Chr01 | 6 | CH_cla_192 | 3 | 3 | 0.0000706418 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_157 | 4 | 4 | 0.0000000414516 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_522 | 3 | 3 | 0.0000371692 |
| Magnolia biondii | Chr13 | 6 | CH_mbi_646 | 3 | 3 | 0.0000103489 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_57 | 7 | 7 | 6.55032e-17 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_613 | 3 | 4 | 0.000221456 |
| Prunus persica | Pp05 | 6 | CH_ppe_58 | 9 | 10 | 1.27965e-21 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_364 | 5 | 9 | 0.000000000283 |
| Vigna mungo | CM024074.1 | 6 | CH_vmu_34 | 7 | 8 | 4.71822e-16 |
| Zea mays | 1 | 6 | CH_zma_268 | 4 | 8 | 0.00000818718 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |