Functional clusters
Information
- Type InterPro
- Description Terpene synthase, N-terminal domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 5 | CH_aag_228 | 4 | 19 | 0.000104281 |
| Aethionema arabicum | LG-9 | 5 | CH_aar_117 | 4 | 4 | 0.0000000110389 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 5 | CH_arhy_1222 | 3 | 4 | 0.000589577 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 5 | CH_atr_354 | 3 | 4 | 0.0000670189 |
| Brassica oleracea | C3 | 5 | CH_bol_534 | 3 | 4 | 0.000041939 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_136 | 8 | 23 | 0.0000000000000204604 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_146 | 7 | 35 | 0.000000000416497 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_744 | 3 | 5 | 0.000603445 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_62 | 6 | 6 | 0.000000000000016158 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_263 | 8 | 11 | 0.00000000000000145689 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_283 | 7 | 25 | 0.000000000557659 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_1192 | 3 | 4 | 0.00066317 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_242 | 7 | 15 | 0.00000000000695589 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_307 | 5 | 10 | 0.0000000308391 |
| Malus domestica | Chr17 | 5 | CH_mdo_775 | 4 | 14 | 0.0000200874 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1356 | 5 | 76 | 0.000640804 |
| Petunia axillaris | Peaxi162Scf00014 | 5 | CH_pax_93 | 6 | 9 | 0.0000000000838017 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_46 | 10 | 15 | 2.24757e-22 |
| Phaseolus vulgaris | Chr05 | 5 | CH_pvu_198 | 6 | 24 | 0.0000000103498 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_412 | 3 | 3 | 0.0000529991 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_377 | 4 | 4 | 0.0000000474914 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_639 | 3 | 3 | 0.0000446001 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_388 | 6 | 52 | 0.00000383391 |
| Simmondsia chinensis | GWHAASQ00000021 | 5 | CH_sci_162 | 4 | 6 | 0.000000567787 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1240 | 6 | 16 | 0.000000714025 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1437 | 4 | 4 | 0.00000721855 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1438 | 4 | 4 | 0.00000721855 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_313 | 11 | 26 | 3.4752e-16 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_124 | 5 | 6 | 0.0000000000571521 |
| Utricularia gibba | unitig_748 | 5 | CH_ugi_387 | 2 | 2 | 0.000820479 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_104 | 5 | 13 | 0.00000000195036 |
| Vanilla planifolia | CM028162.1 | 5 | CH_vpl_314 | 3 | 3 | 0.0000239542 |
| Vitis vinifera | chrUn | 5 | CH_vvi_112 | 12 | 80 | 0.000000000000105163 |
| Anthoceros agrestis | Sc2ySwM_368 | 6 | CH_aag_228 | 4 | 19 | 0.000104281 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_117 | 4 | 4 | 0.0000000110389 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 6 | CH_arhy_1222 | 3 | 4 | 0.000589577 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 6 | CH_atr_354 | 3 | 4 | 0.0000670189 |
| Brassica oleracea | C3 | 6 | CH_bol_534 | 3 | 4 | 0.000041939 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_136 | 8 | 23 | 0.0000000000000204604 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_146 | 7 | 35 | 0.000000000416497 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_744 | 3 | 5 | 0.000603445 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_62 | 6 | 6 | 0.000000000000016158 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_263 | 8 | 11 | 0.00000000000000145689 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_283 | 7 | 25 | 0.000000000557659 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_1192 | 3 | 4 | 0.00066317 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_242 | 7 | 15 | 0.00000000000695589 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_307 | 5 | 10 | 0.0000000308391 |
| Malus domestica | Chr17 | 6 | CH_mdo_775 | 4 | 14 | 0.0000200874 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1356 | 5 | 76 | 0.000640804 |
| Petunia axillaris | Peaxi162Scf00014 | 6 | CH_pax_93 | 6 | 9 | 0.0000000000838017 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_46 | 10 | 15 | 2.24757e-22 |
| Phaseolus vulgaris | Chr05 | 6 | CH_pvu_198 | 6 | 24 | 0.0000000103498 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_412 | 3 | 3 | 0.0000529991 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_377 | 4 | 4 | 0.0000000474914 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_639 | 3 | 3 | 0.0000446001 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_388 | 6 | 52 | 0.00000383391 |
| Simmondsia chinensis | GWHAASQ00000021 | 6 | CH_sci_162 | 4 | 6 | 0.000000567787 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1240 | 6 | 16 | 0.000000714025 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1437 | 4 | 4 | 0.00000721855 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1438 | 4 | 4 | 0.00000721855 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_313 | 11 | 26 | 3.4752e-16 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_124 | 5 | 6 | 0.0000000000571521 |
| Utricularia gibba | unitig_748 | 6 | CH_ugi_387 | 2 | 2 | 0.000820479 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_104 | 5 | 13 | 0.00000000195036 |
| Vanilla planifolia | CM028162.1 | 6 | CH_vpl_314 | 3 | 3 | 0.0000239542 |
| Vitis vinifera | chrUn | 6 | CH_vvi_112 | 12 | 80 | 0.000000000000105163 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |