Functional clusters
Information
- Type InterPro
- Description RlpA-like domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group3 | 5 | CH_ach_424 | 3 | 3 | 0.000275299 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 5 | CH_atr_227 | 4 | 5 | 0.000000307461 |
| Brassica oleracea | C4 | 5 | CH_bol_238 | 4 | 4 | 0.0000000665679 |
| Corylus avellana | 3 | 5 | CH_cav_411 | 4 | 7 | 0.0000186014 |
| Chara braunii | BFEA01000023 | 5 | CH_cbr_44 | 5 | 12 | 0.00000000047641 |
| Davidia involucrata | GWHABJS00000014 | 5 | CH_din_693 | 3 | 3 | 0.000320118 |
| Glycine max | Gm05 | 5 | CH_gma_254 | 5 | 6 | 0.00000000816396 |
| Medicago truncatula | chr7 | 5 | CH_mtr_786 | 5 | 20 | 0.00000488996 |
| Quercus lobata | CM012294 | 5 | CH_qlo_607 | 8 | 54 | 0.0000000025107 |
| Quercus lobata | 3 | 5 | CH_qlo_817 | 5 | 10 | 0.000000149886 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_1160 | 3 | 3 | 0.000124902 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1500 | 5 | 13 | 0.0000184522 |
| Actinidia chinensis | Lachesis_group3 | 6 | CH_ach_424 | 3 | 3 | 0.000275299 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 6 | CH_atr_227 | 4 | 5 | 0.000000307461 |
| Brassica oleracea | C4 | 6 | CH_bol_238 | 4 | 4 | 0.0000000665679 |
| Corylus avellana | 3 | 6 | CH_cav_411 | 4 | 7 | 0.0000186014 |
| Chara braunii | BFEA01000023 | 6 | CH_cbr_44 | 5 | 12 | 0.00000000047641 |
| Davidia involucrata | GWHABJS00000014 | 6 | CH_din_693 | 3 | 3 | 0.000320118 |
| Glycine max | Gm05 | 6 | CH_gma_254 | 5 | 6 | 0.00000000816396 |
| Medicago truncatula | chr7 | 6 | CH_mtr_786 | 5 | 20 | 0.00000488996 |
| Quercus lobata | CM012294 | 6 | CH_qlo_607 | 8 | 54 | 0.0000000025107 |
| Quercus lobata | 3 | 6 | CH_qlo_817 | 5 | 10 | 0.000000149886 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_1160 | 3 | 3 | 0.000124902 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1500 | 5 | 13 | 0.0000184522 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |