Functional clusters
Information
- Type InterPro
- Description Histidine kinase/HSP90-like ATPase superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_295 | 7 | 24 | 0.000000000491344 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_249 | 3 | 3 | 0.000128939 |
| Corylus avellana | 4 | 5 | CH_cav_558 | 3 | 3 | 0.0000871184 |
| Corylus avellana | 9 | 5 | CH_cav_559 | 3 | 3 | 0.0000871184 |
| Chara braunii | BFEA01000143 | 5 | CH_cbr_136 | 5 | 28 | 0.00000967374 |
| Citrus clementina | scaffold_4 | 5 | CH_ccl_309 | 4 | 4 | 0.000000185377 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_104 | 6 | 7 | 0.00000000000420948 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_675 | 3 | 4 | 0.000328751 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_535 | 4 | 9 | 0.0000353209 |
| Carya illinoinensis | Chr12 | 5 | CH_cil_838 | 4 | 17 | 0.000660028 |
| Lotus japonicus | chr5 | 5 | CH_lja_220 | 4 | 4 | 0.000000402936 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_547 | 5 | 23 | 0.0000153725 |
| Malus domestica | Chr06 | 5 | CH_mdo_791 | 5 | 27 | 0.0000241188 |
| Medicago truncatula | chr8 | 5 | CH_mtr_861 | 4 | 10 | 0.0000184389 |
| Prunus persica | Pp05 | 5 | CH_ppe_418 | 5 | 17 | 0.00000172935 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_253 | 5 | 7 | 0.00000000803531 |
| Quercus lobata | 10 | 5 | CH_qlo_364 | 7 | 12 | 0.000000000000353213 |
| Rhododendron simsii | chr10 | 5 | CH_rsi_946 | 3 | 4 | 0.00061897 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_734 | 8 | 61 | 0.0000000012621 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_757 | 6 | 17 | 0.00000000340055 |
| Vanilla planifolia | CM028155.1 | 5 | CH_vpl_265 | 6 | 51 | 0.00000686634 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_295 | 7 | 24 | 0.000000000491344 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_249 | 3 | 3 | 0.000128939 |
| Corylus avellana | 4 | 6 | CH_cav_558 | 3 | 3 | 0.0000871184 |
| Corylus avellana | 9 | 6 | CH_cav_559 | 3 | 3 | 0.0000871184 |
| Chara braunii | BFEA01000143 | 6 | CH_cbr_136 | 5 | 28 | 0.00000967374 |
| Citrus clementina | scaffold_4 | 6 | CH_ccl_309 | 4 | 4 | 0.000000185377 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_104 | 6 | 7 | 0.00000000000420948 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_675 | 3 | 4 | 0.000328751 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_535 | 4 | 9 | 0.0000353209 |
| Carya illinoinensis | Chr12 | 6 | CH_cil_838 | 4 | 17 | 0.000660028 |
| Lotus japonicus | chr5 | 6 | CH_lja_220 | 4 | 4 | 0.000000402936 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_547 | 5 | 23 | 0.0000153725 |
| Malus domestica | Chr06 | 6 | CH_mdo_791 | 5 | 27 | 0.0000241188 |
| Medicago truncatula | chr8 | 6 | CH_mtr_861 | 4 | 10 | 0.0000184389 |
| Prunus persica | Pp05 | 6 | CH_ppe_418 | 5 | 17 | 0.00000172935 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_253 | 5 | 7 | 0.00000000803531 |
| Quercus lobata | 10 | 6 | CH_qlo_364 | 7 | 12 | 0.000000000000353213 |
| Rhododendron simsii | chr10 | 6 | CH_rsi_946 | 3 | 4 | 0.00061897 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_734 | 8 | 61 | 0.0000000012621 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_757 | 6 | 17 | 0.00000000340055 |
| Vanilla planifolia | CM028155.1 | 6 | CH_vpl_265 | 6 | 51 | 0.00000686634 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |