Functional clusters
Information
- Type InterPro
- Description Zinc finger, CCCH-type superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_485 | 3 | 5 | 0.000199442 |
| Brassica napus | C07 | 5 | CH_bna_1294 | 3 | 3 | 0.000379921 |
| Brassica napus | A09 | 5 | CH_bna_545 | 4 | 4 | 0.000000571219 |
| Brassica oleracea | C7 | 5 | CH_bol_56 | 7 | 10 | 0.0000000000000477014 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_669 | 5 | 9 | 0.0000000421479 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_450 | 5 | 11 | 0.000000123636 |
| Hydrangea macrophylla | Hma1.2p1_0151F.1 | 5 | CH_hma_254 | 3 | 3 | 0.0000541456 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_634 | 3 | 3 | 0.0000875855 |
| Malus domestica | Chr03 | 5 | CH_mdo_345 | 6 | 16 | 0.00000000810043 |
| Malus domestica | Chr14 | 5 | CH_mdo_618 | 4 | 5 | 0.00000199467 |
| Medicago truncatula | chr4 | 5 | CH_mtr_540 | 5 | 13 | 0.0000000864026 |
| Olea europaea | chr9 | 5 | CH_oeu_298 | 4 | 11 | 0.0000437646 |
| Prunus persica | Pp05 | 5 | CH_ppe_63 | 9 | 9 | 1.44883e-20 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_132 | 7 | 36 | 0.000000000810852 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_485 | 3 | 3 | 0.0000661839 |
| Quercus lobata | 1 | 5 | CH_qlo_1386 | 3 | 3 | 0.00015122 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_730 | 3 | 3 | 0.000122432 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_485 | 3 | 5 | 0.000199442 |
| Brassica napus | C07 | 6 | CH_bna_1294 | 3 | 3 | 0.000379921 |
| Brassica napus | A09 | 6 | CH_bna_545 | 4 | 4 | 0.000000571219 |
| Brassica oleracea | C7 | 6 | CH_bol_56 | 7 | 10 | 0.0000000000000477014 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_669 | 5 | 9 | 0.0000000421479 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_450 | 5 | 11 | 0.000000123636 |
| Hydrangea macrophylla | Hma1.2p1_0151F.1 | 6 | CH_hma_254 | 3 | 3 | 0.0000541456 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_634 | 3 | 3 | 0.0000875855 |
| Malus domestica | Chr03 | 6 | CH_mdo_345 | 6 | 16 | 0.00000000810043 |
| Malus domestica | Chr14 | 6 | CH_mdo_618 | 4 | 5 | 0.00000199467 |
| Medicago truncatula | chr4 | 6 | CH_mtr_540 | 5 | 13 | 0.0000000864026 |
| Olea europaea | chr9 | 6 | CH_oeu_298 | 4 | 11 | 0.0000437646 |
| Prunus persica | Pp05 | 6 | CH_ppe_63 | 9 | 9 | 1.44883e-20 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_132 | 7 | 36 | 0.000000000810852 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_485 | 3 | 3 | 0.0000661839 |
| Quercus lobata | 1 | 6 | CH_qlo_1386 | 3 | 3 | 0.00015122 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_730 | 3 | 3 | 0.000122432 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |