Functional clusters

Information

  • Type InterPro
  • Description NADP-dependent oxidoreductase domain superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 5 CH_acertr_20 10 16 6.18006e-22
Acer truncatum chr4 5 CH_acertr_517 3 3 0.0000532287
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_843 4 7 0.0000238358
Brassica carinata ChrB02 5 CH_bca_33 8 10 9.76718e-20
Brassica carinata ChrC02 5 CH_bca_76 7 11 0.00000000000000121708
Brassica napus A05 5 CH_bna_119 6 8 0.000000000000126011
Brassica napus C04 5 CH_bna_23 9 12 1.62453e-22
Camellia sinensis var. sinensis Chr6 5 CH_camsi_168 8 24 0.000000000000248457
Camellia sinensis var. sinensis Chr8 5 CH_camsi_519 4 4 0.000000141058
Capsicum annuum PGAv.1.6.scaffold48 5 CH_can_732 3 6 0.00027182
Corylus avellana 9 5 CH_cav_666 3 4 0.000257541
Coffea canephora chr3 5 CH_ccan_387 4 57 0.0000444096
Coffea canephora chr2 5 CH_ccan_701 3 18 0.000758668
Coffea canephora chr4 5 CH_ccan_99 5 25 0.000000000714422
Citrus clementina scaffold_8 5 CH_ccl_125 7 10 0.000000000000211177
Carpinus fangiana Cfa04 5 CH_cfa_216 5 7 0.0000000624646
Corchorus olitorius AWUE01015454.1 5 CH_col_9 9 12 4.85236e-18
Carica papaya supercontig_33 5 CH_cpa_250 3 3 0.0000274393
Davidia involucrata GWHABJS00000016 5 CH_din_28 10 13 1.56896e-21
Durio zibethinus NW_019167971.1 5 CH_dzi_405 3 3 0.000075488
Eutrema salsugineum scaffold_8 5 CH_esa_62 6 6 0.0000000000000217138
Lupinus albus Lalb_Chr01 5 CH_lal_364 3 3 0.0000225426
Lonicera japonica GWHAAZE00000003 5 CH_lonja_15 23 38 1.72491e-45
Lonicera japonica GWHAAZE00000006 5 CH_lonja_57 14 18 1.34448e-28
Magnolia biondii Chr11 5 CH_mbi_130 6 8 0.000000000000117427
Magnolia biondii Chr04 5 CH_mbi_340 4 4 0.0000000253686
Malus domestica Chr04 5 CH_mdo_386 5 9 0.0000000202901
Medicago truncatula chr4 5 CH_mtr_742 4 8 0.00000237019
Medicago truncatula chr6 5 CH_mtr_896 3 3 0.0000384385
Oryza sativa ssp. japonica chr04 5 CH_osa_118 6 12 0.00000000000942651
Pisum sativum chr1LG6 5 CH_psa_648 3 5 0.000402662
Salix brachista GWHAAZH00000014 5 CH_sbr_313 4 7 0.00000154383
Simmondsia chinensis GWHAASQ00000019 5 CH_sci_112 4 4 0.0000000439845
Sequoiadendron giganteum chr3 5 CH_sgi_125 13 23 1.91597e-25
Theobroma cacao Chromosome_4 5 CH_tca_81 7 8 0.00000000000000181164
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_1 25 28 1.28141e-58
Acer truncatum chr4 6 CH_acertr_20 10 16 6.18006e-22
Acer truncatum chr4 6 CH_acertr_517 3 3 0.0000532287
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_843 4 7 0.0000238358
Brassica carinata ChrB02 6 CH_bca_33 8 10 9.76718e-20
Brassica carinata ChrC02 6 CH_bca_76 7 11 0.00000000000000121708
Brassica napus A05 6 CH_bna_119 6 8 0.000000000000126011
Brassica napus C04 6 CH_bna_23 9 12 1.62453e-22
Camellia sinensis var. sinensis Chr6 6 CH_camsi_168 8 24 0.000000000000248457
Camellia sinensis var. sinensis Chr8 6 CH_camsi_519 4 4 0.000000141058
Capsicum annuum PGAv.1.6.scaffold48 6 CH_can_732 3 6 0.00027182
Corylus avellana 9 6 CH_cav_666 3 4 0.000257541
Coffea canephora chr3 6 CH_ccan_387 4 57 0.0000444096
Coffea canephora chr2 6 CH_ccan_701 3 18 0.000758668
Coffea canephora chr4 6 CH_ccan_99 5 25 0.000000000714422
Citrus clementina scaffold_8 6 CH_ccl_125 7 10 0.000000000000211177
Carpinus fangiana Cfa04 6 CH_cfa_216 5 7 0.0000000624646
Corchorus olitorius AWUE01015454.1 6 CH_col_9 9 12 4.85236e-18
Carica papaya supercontig_33 6 CH_cpa_250 3 3 0.0000274393
Davidia involucrata GWHABJS00000016 6 CH_din_28 10 13 1.56896e-21
Durio zibethinus NW_019167971.1 6 CH_dzi_405 3 3 0.000075488
Eutrema salsugineum scaffold_8 6 CH_esa_62 6 6 0.0000000000000217138
Fragaria x ananassa Fvb6-3 6 CH_fan_128 6 9 0.0000000000103323
Fragaria x ananassa Fvb6-2 6 CH_fan_200 5 6 0.000000000739868
Fragaria x ananassa Fvb6-4 6 CH_fan_341 4 4 0.000000122378
Fragaria x ananassa Fvb6-2 6 CH_fan_408 4 5 0.000000611391
Fragaria x ananassa Fvb6-3 6 CH_fan_615 6 64 0.00000879705
Lupinus albus Lalb_Chr01 6 CH_lal_364 3 3 0.0000225426
Lonicera japonica GWHAAZE00000003 6 CH_lonja_15 23 38 1.72491e-45
Lonicera japonica GWHAAZE00000006 6 CH_lonja_57 14 18 1.34448e-28
Magnolia biondii Chr11 6 CH_mbi_130 6 8 0.000000000000117427
Magnolia biondii Chr04 6 CH_mbi_340 4 4 0.0000000253686
Malus domestica Chr04 6 CH_mdo_386 5 9 0.0000000202901
Medicago truncatula chr4 6 CH_mtr_742 4 8 0.00000237019
Medicago truncatula chr6 6 CH_mtr_896 3 3 0.0000384385
Oryza sativa ssp. japonica chr04 6 CH_osa_118 6 12 0.00000000000942651
Pisum sativum chr1LG6 6 CH_psa_648 3 5 0.000402662
Salix brachista GWHAAZH00000014 6 CH_sbr_313 4 7 0.00000154383
Simmondsia chinensis GWHAASQ00000019 6 CH_sci_112 4 4 0.0000000439845
Sequoiadendron giganteum chr3 6 CH_sgi_125 13 23 1.91597e-25
Theobroma cacao Chromosome_4 6 CH_tca_81 7 8 0.00000000000000181164
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_1 25 28 1.28141e-58

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001