Functional clusters
Information
- Type InterPro
- Description NADP-dependent oxidoreductase domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 5 | CH_acertr_20 | 10 | 16 | 6.18006e-22 |
| Acer truncatum | chr4 | 5 | CH_acertr_517 | 3 | 3 | 0.0000532287 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_843 | 4 | 7 | 0.0000238358 |
| Brassica carinata | ChrB02 | 5 | CH_bca_33 | 8 | 10 | 9.76718e-20 |
| Brassica carinata | ChrC02 | 5 | CH_bca_76 | 7 | 11 | 0.00000000000000121708 |
| Brassica napus | A05 | 5 | CH_bna_119 | 6 | 8 | 0.000000000000126011 |
| Brassica napus | C04 | 5 | CH_bna_23 | 9 | 12 | 1.62453e-22 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_168 | 8 | 24 | 0.000000000000248457 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_519 | 4 | 4 | 0.000000141058 |
| Capsicum annuum | PGAv.1.6.scaffold48 | 5 | CH_can_732 | 3 | 6 | 0.00027182 |
| Corylus avellana | 9 | 5 | CH_cav_666 | 3 | 4 | 0.000257541 |
| Coffea canephora | chr3 | 5 | CH_ccan_387 | 4 | 57 | 0.0000444096 |
| Coffea canephora | chr2 | 5 | CH_ccan_701 | 3 | 18 | 0.000758668 |
| Coffea canephora | chr4 | 5 | CH_ccan_99 | 5 | 25 | 0.000000000714422 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_125 | 7 | 10 | 0.000000000000211177 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_216 | 5 | 7 | 0.0000000624646 |
| Corchorus olitorius | AWUE01015454.1 | 5 | CH_col_9 | 9 | 12 | 4.85236e-18 |
| Carica papaya | supercontig_33 | 5 | CH_cpa_250 | 3 | 3 | 0.0000274393 |
| Davidia involucrata | GWHABJS00000016 | 5 | CH_din_28 | 10 | 13 | 1.56896e-21 |
| Durio zibethinus | NW_019167971.1 | 5 | CH_dzi_405 | 3 | 3 | 0.000075488 |
| Eutrema salsugineum | scaffold_8 | 5 | CH_esa_62 | 6 | 6 | 0.0000000000000217138 |
| Lupinus albus | Lalb_Chr01 | 5 | CH_lal_364 | 3 | 3 | 0.0000225426 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_15 | 23 | 38 | 1.72491e-45 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_57 | 14 | 18 | 1.34448e-28 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_130 | 6 | 8 | 0.000000000000117427 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_340 | 4 | 4 | 0.0000000253686 |
| Malus domestica | Chr04 | 5 | CH_mdo_386 | 5 | 9 | 0.0000000202901 |
| Medicago truncatula | chr4 | 5 | CH_mtr_742 | 4 | 8 | 0.00000237019 |
| Medicago truncatula | chr6 | 5 | CH_mtr_896 | 3 | 3 | 0.0000384385 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_118 | 6 | 12 | 0.00000000000942651 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_648 | 3 | 5 | 0.000402662 |
| Salix brachista | GWHAAZH00000014 | 5 | CH_sbr_313 | 4 | 7 | 0.00000154383 |
| Simmondsia chinensis | GWHAASQ00000019 | 5 | CH_sci_112 | 4 | 4 | 0.0000000439845 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_125 | 13 | 23 | 1.91597e-25 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_81 | 7 | 8 | 0.00000000000000181164 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_1 | 25 | 28 | 1.28141e-58 |
| Acer truncatum | chr4 | 6 | CH_acertr_20 | 10 | 16 | 6.18006e-22 |
| Acer truncatum | chr4 | 6 | CH_acertr_517 | 3 | 3 | 0.0000532287 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_843 | 4 | 7 | 0.0000238358 |
| Brassica carinata | ChrB02 | 6 | CH_bca_33 | 8 | 10 | 9.76718e-20 |
| Brassica carinata | ChrC02 | 6 | CH_bca_76 | 7 | 11 | 0.00000000000000121708 |
| Brassica napus | A05 | 6 | CH_bna_119 | 6 | 8 | 0.000000000000126011 |
| Brassica napus | C04 | 6 | CH_bna_23 | 9 | 12 | 1.62453e-22 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_168 | 8 | 24 | 0.000000000000248457 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_519 | 4 | 4 | 0.000000141058 |
| Capsicum annuum | PGAv.1.6.scaffold48 | 6 | CH_can_732 | 3 | 6 | 0.00027182 |
| Corylus avellana | 9 | 6 | CH_cav_666 | 3 | 4 | 0.000257541 |
| Coffea canephora | chr3 | 6 | CH_ccan_387 | 4 | 57 | 0.0000444096 |
| Coffea canephora | chr2 | 6 | CH_ccan_701 | 3 | 18 | 0.000758668 |
| Coffea canephora | chr4 | 6 | CH_ccan_99 | 5 | 25 | 0.000000000714422 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_125 | 7 | 10 | 0.000000000000211177 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_216 | 5 | 7 | 0.0000000624646 |
| Corchorus olitorius | AWUE01015454.1 | 6 | CH_col_9 | 9 | 12 | 4.85236e-18 |
| Carica papaya | supercontig_33 | 6 | CH_cpa_250 | 3 | 3 | 0.0000274393 |
| Davidia involucrata | GWHABJS00000016 | 6 | CH_din_28 | 10 | 13 | 1.56896e-21 |
| Durio zibethinus | NW_019167971.1 | 6 | CH_dzi_405 | 3 | 3 | 0.000075488 |
| Eutrema salsugineum | scaffold_8 | 6 | CH_esa_62 | 6 | 6 | 0.0000000000000217138 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_128 | 6 | 9 | 0.0000000000103323 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_200 | 5 | 6 | 0.000000000739868 |
| Fragaria x ananassa | Fvb6-4 | 6 | CH_fan_341 | 4 | 4 | 0.000000122378 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_408 | 4 | 5 | 0.000000611391 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_615 | 6 | 64 | 0.00000879705 |
| Lupinus albus | Lalb_Chr01 | 6 | CH_lal_364 | 3 | 3 | 0.0000225426 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_15 | 23 | 38 | 1.72491e-45 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_57 | 14 | 18 | 1.34448e-28 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_130 | 6 | 8 | 0.000000000000117427 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_340 | 4 | 4 | 0.0000000253686 |
| Malus domestica | Chr04 | 6 | CH_mdo_386 | 5 | 9 | 0.0000000202901 |
| Medicago truncatula | chr4 | 6 | CH_mtr_742 | 4 | 8 | 0.00000237019 |
| Medicago truncatula | chr6 | 6 | CH_mtr_896 | 3 | 3 | 0.0000384385 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_118 | 6 | 12 | 0.00000000000942651 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_648 | 3 | 5 | 0.000402662 |
| Salix brachista | GWHAAZH00000014 | 6 | CH_sbr_313 | 4 | 7 | 0.00000154383 |
| Simmondsia chinensis | GWHAASQ00000019 | 6 | CH_sci_112 | 4 | 4 | 0.0000000439845 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_125 | 13 | 23 | 1.91597e-25 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_81 | 7 | 8 | 0.00000000000000181164 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_1 | 25 | 28 | 1.28141e-58 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |