Functional clusters
Information
- Type InterPro
- Description LysM domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 5 | CH_acertr_445 | 3 | 3 | 0.00000991516 |
| Aquilegia oxysepala | CHR04 | 5 | CH_aox_195 | 4 | 8 | 0.000000956833 |
| Corylus avellana | 5 | 5 | CH_cav_459 | 3 | 4 | 0.000054285 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_177 | 4 | 4 | 0.0000000279889 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_577 | 3 | 5 | 0.000302198 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_1120 | 3 | 4 | 0.0000923279 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_553 | 3 | 5 | 0.000140688 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_869 | 3 | 5 | 0.0000908673 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_105 | 6 | 7 | 0.0000000000000212841 |
| Malus domestica | Chr04 | 5 | CH_mdo_516 | 4 | 8 | 0.000000359726 |
| Medicago truncatula | chr4 | 5 | CH_mtr_796 | 3 | 3 | 0.00000582402 |
| Nicotiana tabacum | Nitab4.5_0000525 | 5 | CH_nta_236 | 3 | 7 | 0.000180455 |
| Prunus persica | Pp03 | 5 | CH_ppe_195 | 5 | 6 | 0.0000000000592018 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_1294 | 3 | 10 | 0.000379702 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1461 | 3 | 4 | 0.0000104125 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_2187 | 3 | 6 | 0.000207961 |
| Acer truncatum | chr5 | 6 | CH_acertr_445 | 3 | 3 | 0.00000991516 |
| Aquilegia oxysepala | CHR04 | 6 | CH_aox_195 | 4 | 8 | 0.000000956833 |
| Corylus avellana | 5 | 6 | CH_cav_459 | 3 | 4 | 0.000054285 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_177 | 4 | 4 | 0.0000000279889 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_577 | 3 | 5 | 0.000302198 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_1120 | 3 | 4 | 0.0000923279 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_553 | 3 | 5 | 0.000140688 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_869 | 3 | 5 | 0.0000908673 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_105 | 6 | 7 | 0.0000000000000212841 |
| Malus domestica | Chr04 | 6 | CH_mdo_516 | 4 | 8 | 0.000000359726 |
| Medicago truncatula | chr4 | 6 | CH_mtr_796 | 3 | 3 | 0.00000582402 |
| Nicotiana tabacum | Nitab4.5_0000525 | 6 | CH_nta_236 | 3 | 7 | 0.000180455 |
| Prunus persica | Pp03 | 6 | CH_ppe_195 | 5 | 6 | 0.0000000000592018 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_1294 | 3 | 10 | 0.000379702 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1461 | 3 | 4 | 0.0000104125 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_2187 | 3 | 6 | 0.000207961 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |