Functional clusters
Information
- Type InterPro
- Description Bulb-type lectin domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 5 | CH_aar_303 | 3 | 4 | 0.000163464 |
| Acer truncatum | ctg752_3 | 5 | CH_acertr_480 | 4 | 7 | 0.0000191054 |
| Actinidia chinensis | Lachesis_group19 | 5 | CH_ach_213 | 4 | 8 | 0.00000837738 |
| Amborella trichopoda | AmTr_v1.0_scaffold00022 | 5 | CH_atr_34 | 10 | 15 | 3.4057e-20 |
| Capsicum annuum | PGAv.1.6.scaffold464 | 5 | CH_can_302 | 6 | 13 | 0.000000103702 |
| Corylus avellana | 8 | 5 | CH_cav_12 | 20 | 34 | 1.74359e-33 |
| Corylus avellana | 8 | 5 | CH_cav_450 | 5 | 11 | 0.0000420231 |
| Corylus avellana | 1 | 5 | CH_cav_55 | 14 | 59 | 0.00000000000000156427 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_236 | 7 | 14 | 0.00000000568254 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_90 | 10 | 14 | 1.76242e-16 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_151 | 6 | 8 | 0.00000000073439 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_8 | 17 | 23 | 2.52785e-34 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_315 | 6 | 9 | 0.0000000668799 |
| Carya illinoinensis | Chr03 | 5 | CH_cil_67 | 13 | 24 | 1.98561e-19 |
| Corchorus olitorius | AWUE01020865.1 | 5 | CH_col_187 | 3 | 5 | 0.000365175 |
| Carica papaya | supercontig_97 | 5 | CH_cpa_151 | 4 | 4 | 0.000000190285 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 5 | CH_cqu_19 | 13 | 16 | 5.29833e-27 |
| Davidia involucrata | GWHABJS00000014 | 5 | CH_din_16 | 14 | 23 | 1.27243e-26 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_24 | 25 | 33 | 1.02857e-41 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_302 | 10 | 13 | 0.0000000000000111004 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_368 | 8 | 8 | 0.000000000000628081 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_424 | 9 | 14 | 0.0000000000096571 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_251 | 6 | 9 | 0.00000000910804 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_42 | 16 | 26 | 7.76372e-31 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_89 | 11 | 14 | 6.73853e-22 |
| Gossypium raimondii | Chr07 | 5 | CH_gra_581 | 6 | 54 | 0.000330269 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_485 | 6 | 11 | 0.000000287044 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_573 | 9 | 66 | 0.00000193269 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_730 | 5 | 9 | 0.0000165429 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_875 | 6 | 25 | 0.000103921 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_147 | 9 | 14 | 6.63574e-16 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_148 | 9 | 14 | 6.63574e-16 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_355 | 5 | 5 | 0.00000000621838 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_88 | 12 | 23 | 7.81687e-21 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_222 | 7 | 13 | 0.000000000950789 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_32 | 13 | 24 | 4.43445e-23 |
| Malus domestica | Chr05 | 5 | CH_mdo_25 | 18 | 66 | 7.78232e-25 |
| Marchantia polymorpha | scaffold_44 | 5 | CH_mpo_80 | 4 | 5 | 0.000000413341 |
| Medicago truncatula | chr2 | 5 | CH_mtr_1212 | 4 | 7 | 0.000278951 |
| Medicago truncatula | chr4 | 5 | CH_mtr_72 | 13 | 21 | 1.10844e-22 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_111 | 6 | 9 | 0.000000000784024 |
| Nicotiana tabacum | Nitab4.5_0000883 | 5 | CH_nta_60 | 5 | 8 | 0.0000000122174 |
| Olea europaea | chr14 | 5 | CH_oeu_136 | 5 | 7 | 0.000000106055 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_99 | 8 | 16 | 0.00000000000494408 |
| Prunus persica | Pp04 | 5 | CH_ppe_290 | 6 | 9 | 0.0000000165984 |
| Prunus persica | Pp06 | 5 | CH_ppe_38 | 18 | 54 | 3.64827e-25 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_436 | 5 | 7 | 0.00000369003 |
| Populus trichocarpa | scaffold_104 | 5 | CH_ptr_47 | 12 | 13 | 2.86772e-22 |
| Quercus lobata | 1 | 5 | CH_qlo_1330 | 5 | 7 | 0.0000786052 |
| Quercus lobata | 4 | 5 | CH_qlo_1518 | 5 | 8 | 0.000207882 |
| Quercus lobata | 10 | 5 | CH_qlo_1628 | 4 | 4 | 0.000383895 |
| Quercus lobata | 4 | 5 | CH_qlo_163 | 17 | 38 | 6.65011e-20 |
| Quercus lobata | 11 | 5 | CH_qlo_365 | 9 | 10 | 0.000000000000355023 |
| Quercus lobata | 6 | 5 | CH_qlo_366 | 9 | 10 | 0.000000000000355023 |
| Quercus lobata | 8 | 5 | CH_qlo_676 | 7 | 9 | 0.0000000131311 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1263 | 5 | 12 | 0.000256589 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_260 | 12 | 46 | 0.00000000000213806 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_346 | 11 | 46 | 0.000000000129333 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_60 | 21 | 74 | 3.71898e-25 |
| Rhododendron simsii | chr10 | 5 | CH_rsi_115 | 10 | 14 | 8.37885e-17 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_322 | 7 | 15 | 0.0000000067101 |
| Rhododendron simsii | ctg618 | 5 | CH_rsi_80 | 11 | 13 | 2.78195e-20 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_5 | 23 | 44 | 2.65059e-41 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_35 | 23 | 48 | 1.05672e-40 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_182 | 7 | 15 | 0.00000000019288 |
| Selaginella moellendorffii | scaffold_124 | 5 | CH_smo_360 | 4 | 6 | 0.000859758 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_201 | 7 | 13 | 0.000000000570488 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_294 | 4 | 4 | 0.0000023392 |
| Vitis vinifera | chr12 | 5 | CH_vvi_467 | 5 | 19 | 0.0000368981 |
| Aethionema arabicum | LG-4 | 6 | CH_aar_303 | 3 | 4 | 0.000163464 |
| Acer truncatum | ctg752_3 | 6 | CH_acertr_480 | 4 | 7 | 0.0000191054 |
| Actinidia chinensis | Lachesis_group19 | 6 | CH_ach_213 | 4 | 8 | 0.00000837738 |
| Amborella trichopoda | AmTr_v1.0_scaffold00022 | 6 | CH_atr_34 | 10 | 15 | 3.4057e-20 |
| Capsicum annuum | PGAv.1.6.scaffold464 | 6 | CH_can_302 | 6 | 13 | 0.000000103702 |
| Corylus avellana | 8 | 6 | CH_cav_12 | 20 | 34 | 1.74359e-33 |
| Corylus avellana | 8 | 6 | CH_cav_450 | 5 | 11 | 0.0000420231 |
| Corylus avellana | 1 | 6 | CH_cav_55 | 14 | 59 | 0.00000000000000156427 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_236 | 7 | 14 | 0.00000000568254 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_90 | 10 | 14 | 1.76242e-16 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_151 | 6 | 8 | 0.00000000073439 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_8 | 17 | 23 | 2.52785e-34 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_315 | 6 | 9 | 0.0000000668799 |
| Carya illinoinensis | Chr03 | 6 | CH_cil_67 | 13 | 24 | 1.98561e-19 |
| Corchorus olitorius | AWUE01020865.1 | 6 | CH_col_187 | 3 | 5 | 0.000365175 |
| Carica papaya | supercontig_97 | 6 | CH_cpa_151 | 4 | 4 | 0.000000190285 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 6 | CH_cqu_19 | 13 | 16 | 5.29833e-27 |
| Davidia involucrata | GWHABJS00000014 | 6 | CH_din_16 | 14 | 23 | 1.27243e-26 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_24 | 25 | 33 | 1.02857e-41 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_302 | 10 | 13 | 0.0000000000000111004 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_368 | 8 | 8 | 0.000000000000628081 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_424 | 9 | 14 | 0.0000000000096571 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_251 | 6 | 9 | 0.00000000910804 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_42 | 16 | 26 | 7.76372e-31 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_89 | 11 | 14 | 6.73853e-22 |
| Gossypium raimondii | Chr07 | 6 | CH_gra_581 | 6 | 54 | 0.000330269 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_485 | 6 | 11 | 0.000000287044 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_573 | 9 | 66 | 0.00000193269 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_730 | 5 | 9 | 0.0000165429 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_875 | 6 | 25 | 0.000103921 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_147 | 9 | 14 | 6.63574e-16 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_148 | 9 | 14 | 6.63574e-16 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_355 | 5 | 5 | 0.00000000621838 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_88 | 12 | 23 | 7.81687e-21 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_222 | 7 | 13 | 0.000000000950789 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_32 | 13 | 24 | 4.43445e-23 |
| Malus domestica | Chr05 | 6 | CH_mdo_25 | 18 | 66 | 7.78232e-25 |
| Marchantia polymorpha | scaffold_44 | 6 | CH_mpo_80 | 4 | 5 | 0.000000413341 |
| Medicago truncatula | chr2 | 6 | CH_mtr_1212 | 4 | 7 | 0.000278951 |
| Medicago truncatula | chr4 | 6 | CH_mtr_72 | 13 | 21 | 1.10844e-22 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_111 | 6 | 9 | 0.000000000784024 |
| Nicotiana tabacum | Nitab4.5_0000883 | 6 | CH_nta_60 | 5 | 8 | 0.0000000122174 |
| Olea europaea | chr14 | 6 | CH_oeu_136 | 5 | 7 | 0.000000106055 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_99 | 8 | 16 | 0.00000000000494408 |
| Prunus persica | Pp04 | 6 | CH_ppe_290 | 6 | 9 | 0.0000000165984 |
| Prunus persica | Pp06 | 6 | CH_ppe_38 | 18 | 54 | 3.64827e-25 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_436 | 5 | 7 | 0.00000369003 |
| Populus trichocarpa | scaffold_104 | 6 | CH_ptr_47 | 12 | 13 | 2.86772e-22 |
| Quercus lobata | 1 | 6 | CH_qlo_1330 | 5 | 7 | 0.0000786052 |
| Quercus lobata | 4 | 6 | CH_qlo_1518 | 5 | 8 | 0.000207882 |
| Quercus lobata | 10 | 6 | CH_qlo_1628 | 4 | 4 | 0.000383895 |
| Quercus lobata | 4 | 6 | CH_qlo_163 | 17 | 38 | 6.65011e-20 |
| Quercus lobata | 11 | 6 | CH_qlo_365 | 9 | 10 | 0.000000000000355023 |
| Quercus lobata | 6 | 6 | CH_qlo_366 | 9 | 10 | 0.000000000000355023 |
| Quercus lobata | 8 | 6 | CH_qlo_676 | 7 | 9 | 0.0000000131311 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1263 | 5 | 12 | 0.000256589 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_260 | 12 | 46 | 0.00000000000213806 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_346 | 11 | 46 | 0.000000000129333 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_60 | 21 | 74 | 3.71898e-25 |
| Rhododendron simsii | chr10 | 6 | CH_rsi_115 | 10 | 14 | 8.37885e-17 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_322 | 7 | 15 | 0.0000000067101 |
| Rhododendron simsii | ctg618 | 6 | CH_rsi_80 | 11 | 13 | 2.78195e-20 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_5 | 23 | 44 | 2.65059e-41 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_35 | 23 | 48 | 1.05672e-40 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_182 | 7 | 15 | 0.00000000019288 |
| Selaginella moellendorffii | scaffold_124 | 6 | CH_smo_360 | 4 | 6 | 0.000859758 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_201 | 7 | 13 | 0.000000000570488 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_294 | 4 | 4 | 0.0000023392 |
| Vitis vinifera | chr12 | 6 | CH_vvi_467 | 5 | 19 | 0.0000368981 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |