Functional clusters
Information
- Type InterPro
- Description Jacalin-like lectin domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group10 | 5 | CH_ach_544 | 2 | 2 | 0.000543213 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 5 | CH_amhyb_68 | 5 | 12 | 0.0000000029883 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_351 | 3 | 3 | 0.0000241312 |
| Brassica napus | A03 | 5 | CH_bna_1114 | 3 | 3 | 0.000156397 |
| Brassica rapa | A03 | 5 | CH_bra_346 | 3 | 3 | 0.0000448298 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_73 | 9 | 53 | 0.00000000000278988 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 5 | CH_bvu_9 | 14 | 28 | 5.46984e-29 |
| Citrullus lanatus | CG_Chr05 | 5 | CH_cla_38 | 4 | 5 | 0.0000000000523629 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 5 | CH_cqu_66 | 7 | 8 | 5.94945e-17 |
| Chlamydomonas reinhardtii | chromosome_14 | 5 | CH_cre_57 | 3 | 3 | 0.00000232848 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_41 | 6 | 8 | 1.78797e-17 |
| Davidia involucrata | GWHABJS00000015 | 5 | CH_din_187 | 4 | 6 | 0.00000000563274 |
| Lupinus albus | Lalb_Chr18 | 5 | CH_lal_537 | 2 | 2 | 0.000157447 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_177 | 6 | 7 | 0.000000000000676049 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_40 | 13 | 28 | 3.53427e-27 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_70 | 10 | 16 | 9.29527e-22 |
| Sechium edule | LG01 | 5 | CH_sed_2 | 15 | 19 | 1.34477e-41 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_67 | 12 | 18 | 2.15207e-32 |
| Trochodendron aralioides | group1 | 5 | CH_tar_4 | 13 | 20 | 2.95598e-34 |
| Zea mays | 6 | 5 | CH_zma_102 | 4 | 4 | 0.000000000954534 |
| Actinidia chinensis | Lachesis_group10 | 6 | CH_ach_544 | 2 | 2 | 0.000543213 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 6 | CH_amhyb_68 | 5 | 12 | 0.0000000029883 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_351 | 3 | 3 | 0.0000241312 |
| Brassica napus | A03 | 6 | CH_bna_1114 | 3 | 3 | 0.000156397 |
| Brassica rapa | A03 | 6 | CH_bra_346 | 3 | 3 | 0.0000448298 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_73 | 9 | 53 | 0.00000000000278988 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 6 | CH_bvu_9 | 14 | 28 | 5.46984e-29 |
| Citrullus lanatus | CG_Chr05 | 6 | CH_cla_38 | 4 | 5 | 0.0000000000523629 |
| Cucumis melo | chr04 | 6 | CH_cme_31 | 7 | 13 | 9.53021e-20 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 6 | CH_cqu_66 | 7 | 8 | 5.94945e-17 |
| Chlamydomonas reinhardtii | chromosome_14 | 6 | CH_cre_57 | 3 | 3 | 0.00000232848 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_41 | 6 | 8 | 1.78797e-17 |
| Davidia involucrata | GWHABJS00000015 | 6 | CH_din_187 | 4 | 6 | 0.00000000563274 |
| Lupinus albus | Lalb_Chr18 | 6 | CH_lal_537 | 2 | 2 | 0.000157447 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_177 | 6 | 7 | 0.000000000000676049 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_40 | 13 | 28 | 3.53427e-27 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_70 | 10 | 16 | 9.29527e-22 |
| Sechium edule | LG01 | 6 | CH_sed_2 | 15 | 19 | 1.34477e-41 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_67 | 12 | 18 | 2.15207e-32 |
| Trochodendron aralioides | group1 | 6 | CH_tar_4 | 13 | 20 | 2.95598e-34 |
| Zea mays | 6 | 6 | CH_zma_102 | 4 | 4 | 0.000000000954534 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |