Functional clusters
Information
- Type InterPro
- Description Winged helix-like DNA-binding domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_799 | 12 | 77 | 0.0000148648 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_331 | 5 | 6 | 0.0000185518 |
| Capsicum annuum | PGAv.1.6.scaffold294 | 5 | CH_can_749 | 5 | 6 | 0.000406886 |
| Glycine max | Gm14 | 5 | CH_gma_249 | 13 | 73 | 0.00000000717849 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_132 | 14 | 62 | 0.000000000000935068 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_463 | 12 | 78 | 0.00000039711 |
| Manihot esculenta | Chromosome16 | 5 | CH_mes_125 | 10 | 13 | 0.000000000000224628 |
| Medicago truncatula | chr5 | 5 | CH_mtr_477 | 11 | 40 | 0.000000021522 |
| Medicago truncatula | chr3 | 5 | CH_mtr_557 | 13 | 76 | 0.000000116716 |
| Oryza sativa ssp. japonica | chr08 | 5 | CH_osa_388 | 9 | 38 | 0.00000785357 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_246 | 10 | 49 | 0.000000466737 |
| Physcomitrium patens | scaffold_30 | 5 | CH_ppa_11 | 14 | 80 | 0.00000000000424175 |
| Physcomitrium patens | scaffold_32 | 5 | CH_ppa_24 | 12 | 72 | 0.00000000123432 |
| Prunus persica | Pp02 | 5 | CH_ppe_356 | 7 | 10 | 0.000000193104 |
| Prunus persica | Pp02 | 5 | CH_ppe_441 | 12 | 70 | 0.00000302682 |
| Papaver somniferum | NW_020619603.1 | 5 | CH_pso_942 | 9 | 80 | 0.000119129 |
| Quercus lobata | 10 | 5 | CH_qlo_1115 | 12 | 58 | 0.0000134943 |
| Quercus lobata | 3 | 5 | CH_qlo_947 | 13 | 59 | 0.00000105734 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_1031 | 11 | 78 | 0.0000560016 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_847 | 4 | 4 | 0.000496588 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_799 | 12 | 77 | 0.0000148648 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_331 | 5 | 6 | 0.0000185518 |
| Capsicum annuum | PGAv.1.6.scaffold294 | 6 | CH_can_749 | 5 | 6 | 0.000406886 |
| Glycine max | Gm14 | 6 | CH_gma_249 | 13 | 73 | 0.00000000717849 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_132 | 14 | 62 | 0.000000000000935068 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_463 | 12 | 78 | 0.00000039711 |
| Manihot esculenta | Chromosome16 | 6 | CH_mes_125 | 10 | 13 | 0.000000000000224628 |
| Medicago truncatula | chr5 | 6 | CH_mtr_477 | 11 | 40 | 0.000000021522 |
| Medicago truncatula | chr3 | 6 | CH_mtr_557 | 13 | 76 | 0.000000116716 |
| Oryza sativa ssp. japonica | chr08 | 6 | CH_osa_388 | 9 | 38 | 0.00000785357 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_246 | 10 | 49 | 0.000000466737 |
| Physcomitrium patens | scaffold_30 | 6 | CH_ppa_11 | 14 | 80 | 0.00000000000424175 |
| Physcomitrium patens | scaffold_32 | 6 | CH_ppa_24 | 12 | 72 | 0.00000000123432 |
| Prunus persica | Pp02 | 6 | CH_ppe_356 | 7 | 10 | 0.000000193104 |
| Prunus persica | Pp02 | 6 | CH_ppe_441 | 12 | 70 | 0.00000302682 |
| Papaver somniferum | NW_020619603.1 | 6 | CH_pso_942 | 9 | 80 | 0.000119129 |
| Quercus lobata | 10 | 6 | CH_qlo_1115 | 12 | 58 | 0.0000134943 |
| Quercus lobata | 3 | 6 | CH_qlo_947 | 13 | 59 | 0.00000105734 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_1031 | 11 | 78 | 0.0000560016 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_847 | 4 | 4 | 0.000496588 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |