Functional clusters
Information
- Type InterPro
- Description WD40-repeat-containing domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC05 | 5 | CH_bca_1609 | 4 | 4 | 0.000225433 |
| Brassica rapa | A05 | 5 | CH_bra_593 | 4 | 5 | 0.000793969 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_1373 | 8 | 53 | 0.000478218 |
| Quercus lobata | 4 | 5 | CH_qlo_1753 | 4 | 5 | 0.000706363 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_1298 | 5 | 12 | 0.000398027 |
| Salix brachista | GWHAAZH00000013 | 5 | CH_sbr_357 | 11 | 73 | 0.00000504132 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1203 | 5 | 5 | 0.000000442942 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1562 | 9 | 72 | 0.0000415364 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_2354 | 4 | 8 | 0.000346565 |
| Brassica carinata | ChrC05 | 6 | CH_bca_1609 | 4 | 4 | 0.000225433 |
| Brassica rapa | A05 | 6 | CH_bra_593 | 4 | 5 | 0.000793969 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_1373 | 8 | 53 | 0.000478218 |
| Quercus lobata | 4 | 6 | CH_qlo_1753 | 4 | 5 | 0.000706363 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_1298 | 5 | 12 | 0.000398027 |
| Salix brachista | GWHAAZH00000013 | 6 | CH_sbr_357 | 11 | 73 | 0.00000504132 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1203 | 5 | 5 | 0.000000442942 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1562 | 9 | 72 | 0.0000415364 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_2354 | 4 | 8 | 0.000346565 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |