Functional clusters

Information

  • Type InterPro
  • Description NAD(P)-binding domain superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_251 5 9 0.000199605
Acer truncatum chr13 5 CH_acertr_86 9 10 0.00000000000159132
Actinidia chinensis Lachesis_group0 5 CH_ach_571 4 4 0.000663017
Avicennia marina ScioBoG_19743_HRSCAF_19834 5 CH_ama_63 13 64 0.000000690175
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 5 CH_amhyb_280 5 8 0.00019933
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 5 CH_arhy_625 7 10 0.00000102037
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_872 5 5 0.000042458
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 5 CH_arhy_891 7 15 0.0000513548
Arabidopsis thaliana Chr4 5 CH_ath_395 5 10 0.0000479415
Amborella trichopoda AmTr_v1.0_scaffold00011 5 CH_atr_603 7 26 0.000507863
Amborella trichopoda AmTr_v1.0_scaffold00049 5 CH_atr_607 4 4 0.000545915
Brassica carinata ChrC05 5 CH_bca_699 12 74 0.000000642748
Beta vulgaris Chr1_EL10_PGA_scaffold3 5 CH_bvu_452 5 9 0.000392803
Camellia sinensis var. sinensis Chr3 5 CH_camsi_1010 11 72 0.000110568
Camellia sinensis var. sinensis Chr11 5 CH_camsi_22 19 26 3.15575e-26
Camellia sinensis var. sinensis Chr3 5 CH_camsi_836 5 5 0.0000163385
Cannabis sativa NC_044371.1 5 CH_cansat_61 10 13 0.000000000000113157
Capsicum annuum PGAv.1.6.scaffold78 5 CH_can_320 8 15 0.000000307645
Citrus clementina scaffold_3 5 CH_ccl_210 9 13 0.00000000056598
Citrus clementina scaffold_5 5 CH_ccl_327 6 6 0.000000263475
Cardamine hirsuta Chr5 5 CH_chi_385 5 5 0.00000687337
Carya illinoinensis Chr01 5 CH_cil_161 11 17 0.00000000000380893
Carya illinoinensis Chr16 5 CH_cil_532 6 9 0.0000337644
Chenopodium quinoa C_Quinoa_Scaffold_2608 5 CH_cqu_230 8 10 0.00000000268273
Chenopodium quinoa C_Quinoa_Scaffold_4250 5 CH_cqu_658 6 10 0.0000633411
Davidia involucrata GWHABJS00000008 5 CH_din_167 7 7 0.00000000143588
Davidia involucrata GWHABJS00000016 5 CH_din_247 6 6 0.000000120364
Davidia involucrata GWHABJS00000020 5 CH_din_775 5 8 0.000547129
Durio zibethinus NW_019167893.1 5 CH_dzi_231 6 7 0.000000563408
Durio zibethinus NW_019167938.1 5 CH_dzi_362 6 11 0.0000357955
Erythranthe guttata scaffold_2 5 CH_egut_134 10 15 0.00000000000544294
Fragaria vesca Fvb7 5 CH_fve_210 9 16 0.00000000144369
Fragaria vesca Fvb5 5 CH_fve_801 4 4 0.000644504
Gossypium hirsutum D07 5 CH_ghi_494 11 41 0.00000021337
Gossypium hirsutum D10 5 CH_ghi_511 6 6 0.000000305007
Gossypium hirsutum A07 5 CH_ghi_594 10 36 0.00000143703
Glycine max Gm07 5 CH_gma_363 8 16 0.000000339305
Glycine max Gm09 5 CH_gma_564 6 10 0.0000382424
Glycine max Gm03 5 CH_gma_850 6 14 0.000524119
Gossypium raimondii Chr11 5 CH_gra_257 6 6 0.00000017036
Gossypium raimondii Chr01 5 CH_gra_334 10 41 0.00000351955
Helianthus annuus HanXRQChr13 5 CH_han_1046 8 32 0.000355171
Lupinus albus Lalb_Chr21 5 CH_lal_191 6 6 0.000000101295
Lupinus albus Lalb_Chr10 5 CH_lal_660 5 8 0.000470555
Lonicera japonica GWHAAZE00000002 5 CH_lonja_1105 5 7 0.000446821
Lonicera japonica GWHAAZE00000009 5 CH_lonja_668 5 5 0.0000218008
Lonicera japonica GWHAAZE00000009 5 CH_lonja_964 11 70 0.000192433
Magnolia biondii Chr17 5 CH_mbi_167 9 12 0.0000000000100881
Malus domestica Chr07 5 CH_mdo_267 9 14 0.000000000554929
Malus domestica Chr08 5 CH_mdo_738 7 15 0.0000119516
Malus domestica Chr15 5 CH_mdo_750 5 5 0.0000138788
Manihot esculenta Chromosome05 5 CH_mes_376 6 7 0.0000021474
Medicago truncatula chr7 5 CH_mtr_688 6 9 0.00000106577
Nelumbo nucifera chr5 5 CH_nnu_520 4 4 0.000305356
Nelumbo nucifera chr3 5 CH_nnu_521 4 4 0.000305356
Olea europaea chr15 5 CH_oeu_268 6 12 0.0000252975
Oryza sativa ssp. japonica chr07 5 CH_osa_235 6 6 0.000000047674
Petunia axillaris Peaxi162Scf00010 5 CH_pax_172 8 13 0.0000000492959
Petunia axillaris Peaxi162Scf00397 5 CH_pax_192 8 14 0.00000011361
Physcomitrium patens scaffold_46 5 CH_ppa_350 4 4 0.000553665
Prunus persica Pp02 5 CH_ppe_380 7 10 0.00000062557
Pisum sativum chr4LG4 5 CH_psa_185 10 32 0.0000000275071
Pisum sativum chr7LG7 5 CH_psa_200 6 6 0.0000000476206
Papaver somniferum NC_039365.1 5 CH_pso_1071 4 4 0.000321207
Populus trichocarpa Chr14 5 CH_ptr_498 5 5 0.0000229149
Phaseolus vulgaris Chr10 5 CH_pvu_141 9 12 0.000000000164424
Phaseolus vulgaris Chr08 5 CH_pvu_281 7 10 0.000000433763
Quercus lobata 10 5 CH_qlo_649 8 10 0.0000000079309
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_126 14 22 7.3329e-18
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_1451 4 4 0.000821447
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_1452 4 4 0.000821447
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_41 26 64 3.01103e-29
Rhododendron simsii chr07 5 CH_rsi_418 7 10 0.000000158526
Salvia bowleyana GWHASIU00000004 5 CH_sbo_458 6 13 0.0000287466
Salix brachista GWHAAZH00000002 5 CH_sbr_177 8 10 0.00000000233665
Sequoiadendron giganteum chr10 5 CH_sgi_1530 5 5 0.0000273747
Sequoiadendron giganteum chr8 5 CH_sgi_483 10 12 0.00000000000112583
Solanum lycopersicum SL4.0ch01 5 CH_sly_134 9 10 0.00000000000133465
Solanum lycopersicum SL4.0ch10 5 CH_sly_917 4 4 0.000643859
Solanum lycopersicum SL4.0ch03 5 CH_sly_975 5 9 0.000909079
Solanum pennellii Spenn-ch01 5 CH_spe_64 10 11 0.00000000000000222767
Solanum tuberosum ST4.03ch01 5 CH_stu_164 8 8 0.00000000000470627
Selenicereus undatus Scaffold_2055 5 CH_sun_62 7 9 0.000000011257
Trochodendron aralioides group15 5 CH_tar_138 8 9 0.000000000612644
Theobroma cacao Chromosome_1 5 CH_tca_36 16 21 4.45842e-22
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_731 4 4 0.000678854
Tripterygium wilfordii NC_052248.1 5 CH_twi_160 7 9 0.0000000589476
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_233 8 13 0.000000338864
Vigna mungo CM024078.1 5 CH_vmu_102 10 22 0.00000000183005
Vigna mungo CM024077.1 5 CH_vmu_138 8 13 0.0000000251889
Vigna mungo CM024070.1 5 CH_vmu_75 9 12 0.0000000000551943
Vitis vinifera chr16 5 CH_vvi_727 5 7 0.000621336
Zea mays 9 5 CH_zma_93 8 10 0.0000000003387
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_251 5 9 0.000199605
Acer truncatum chr13 6 CH_acertr_86 9 10 0.00000000000159132
Actinidia chinensis Lachesis_group0 6 CH_ach_571 4 4 0.000663017
Avicennia marina ScioBoG_19743_HRSCAF_19834 6 CH_ama_63 13 64 0.000000690175
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 6 CH_amhyb_280 5 8 0.00019933
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 6 CH_arhy_625 7 10 0.00000102037
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_872 5 5 0.000042458
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 6 CH_arhy_891 7 15 0.0000513548
Arabidopsis thaliana Chr4 6 CH_ath_395 5 10 0.0000479415
Amborella trichopoda AmTr_v1.0_scaffold00011 6 CH_atr_603 7 26 0.000507863
Amborella trichopoda AmTr_v1.0_scaffold00049 6 CH_atr_607 4 4 0.000545915
Brassica carinata ChrC05 6 CH_bca_699 12 74 0.000000642748
Beta vulgaris Chr1_EL10_PGA_scaffold3 6 CH_bvu_452 5 9 0.000392803
Camellia sinensis var. sinensis Chr3 6 CH_camsi_1010 11 72 0.000110568
Camellia sinensis var. sinensis Chr11 6 CH_camsi_22 19 26 3.15575e-26
Camellia sinensis var. sinensis Chr3 6 CH_camsi_836 5 5 0.0000163385
Cannabis sativa NC_044371.1 6 CH_cansat_61 10 13 0.000000000000113157
Capsicum annuum PGAv.1.6.scaffold78 6 CH_can_320 8 15 0.000000307645
Citrus clementina scaffold_3 6 CH_ccl_210 9 13 0.00000000056598
Citrus clementina scaffold_5 6 CH_ccl_327 6 6 0.000000263475
Cardamine hirsuta Chr5 6 CH_chi_385 5 5 0.00000687337
Carya illinoinensis Chr01 6 CH_cil_161 11 17 0.00000000000380893
Carya illinoinensis Chr16 6 CH_cil_532 6 9 0.0000337644
Chenopodium quinoa C_Quinoa_Scaffold_2608 6 CH_cqu_230 8 10 0.00000000268273
Chenopodium quinoa C_Quinoa_Scaffold_4250 6 CH_cqu_658 6 10 0.0000633411
Davidia involucrata GWHABJS00000008 6 CH_din_167 7 7 0.00000000143588
Davidia involucrata GWHABJS00000016 6 CH_din_247 6 6 0.000000120364
Davidia involucrata GWHABJS00000020 6 CH_din_775 5 8 0.000547129
Durio zibethinus NW_019167893.1 6 CH_dzi_231 6 7 0.000000563408
Durio zibethinus NW_019167938.1 6 CH_dzi_362 6 11 0.0000357955
Erythranthe guttata scaffold_2 6 CH_egut_134 10 15 0.00000000000544294
Fragaria x ananassa Fvb7-1 6 CH_fan_297 7 9 0.0000000437749
Fragaria vesca Fvb7 6 CH_fve_210 9 16 0.00000000144369
Fragaria vesca Fvb5 6 CH_fve_801 4 4 0.000644504
Gossypium hirsutum D07 6 CH_ghi_494 11 41 0.00000021337
Gossypium hirsutum D10 6 CH_ghi_511 6 6 0.000000305007
Gossypium hirsutum A07 6 CH_ghi_594 10 36 0.00000143703
Glycine max Gm07 6 CH_gma_363 8 16 0.000000339305
Glycine max Gm09 6 CH_gma_564 6 10 0.0000382424
Glycine max Gm03 6 CH_gma_850 6 14 0.000524119
Gossypium raimondii Chr11 6 CH_gra_257 6 6 0.00000017036
Gossypium raimondii Chr01 6 CH_gra_334 10 41 0.00000351955
Helianthus annuus HanXRQChr13 6 CH_han_1046 8 32 0.000355171
Lupinus albus Lalb_Chr21 6 CH_lal_191 6 6 0.000000101295
Lupinus albus Lalb_Chr10 6 CH_lal_660 5 8 0.000470555
Lonicera japonica GWHAAZE00000002 6 CH_lonja_1105 5 7 0.000446821
Lonicera japonica GWHAAZE00000009 6 CH_lonja_668 5 5 0.0000218008
Lonicera japonica GWHAAZE00000009 6 CH_lonja_964 11 70 0.000192433
Magnolia biondii Chr17 6 CH_mbi_167 9 12 0.0000000000100881
Malus domestica Chr07 6 CH_mdo_267 9 14 0.000000000554929
Malus domestica Chr08 6 CH_mdo_738 7 15 0.0000119516
Malus domestica Chr15 6 CH_mdo_750 5 5 0.0000138788
Manihot esculenta Chromosome05 6 CH_mes_376 6 7 0.0000021474
Medicago truncatula chr7 6 CH_mtr_688 6 9 0.00000106577
Nelumbo nucifera chr5 6 CH_nnu_520 4 4 0.000305356
Nelumbo nucifera chr3 6 CH_nnu_521 4 4 0.000305356
Olea europaea chr15 6 CH_oeu_268 6 12 0.0000252975
Oryza sativa ssp. japonica chr07 6 CH_osa_235 6 6 0.000000047674
Petunia axillaris Peaxi162Scf00010 6 CH_pax_172 8 13 0.0000000492959
Petunia axillaris Peaxi162Scf00397 6 CH_pax_192 8 14 0.00000011361
Physcomitrium patens scaffold_46 6 CH_ppa_350 4 4 0.000553665
Prunus persica Pp02 6 CH_ppe_380 7 10 0.00000062557
Pisum sativum chr4LG4 6 CH_psa_185 10 32 0.0000000275071
Pisum sativum chr7LG7 6 CH_psa_200 6 6 0.0000000476206
Papaver somniferum NC_039365.1 6 CH_pso_1071 4 4 0.000321207
Populus trichocarpa Chr14 6 CH_ptr_498 5 5 0.0000229149
Phaseolus vulgaris Chr10 6 CH_pvu_141 9 12 0.000000000164424
Phaseolus vulgaris Chr08 6 CH_pvu_281 7 10 0.000000433763
Quercus lobata 10 6 CH_qlo_649 8 10 0.0000000079309
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_126 14 22 7.3329e-18
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_1451 4 4 0.000821447
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_1452 4 4 0.000821447
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_41 26 64 3.01103e-29
Rhododendron simsii chr07 6 CH_rsi_418 7 10 0.000000158526
Salvia bowleyana GWHASIU00000004 6 CH_sbo_458 6 13 0.0000287466
Salix brachista GWHAAZH00000002 6 CH_sbr_177 8 10 0.00000000233665
Sequoiadendron giganteum chr10 6 CH_sgi_1530 5 5 0.0000273747
Sequoiadendron giganteum chr8 6 CH_sgi_483 10 12 0.00000000000112583
Solanum lycopersicum SL4.0ch01 6 CH_sly_134 9 10 0.00000000000133465
Solanum lycopersicum SL4.0ch10 6 CH_sly_917 4 4 0.000643859
Solanum lycopersicum SL4.0ch03 6 CH_sly_975 5 9 0.000909079
Solanum pennellii Spenn-ch01 6 CH_spe_64 10 11 0.00000000000000222767
Solanum tuberosum ST4.03ch01 6 CH_stu_164 8 8 0.00000000000470627
Selenicereus undatus Scaffold_2055 6 CH_sun_62 7 9 0.000000011257
Trochodendron aralioides group15 6 CH_tar_138 8 9 0.000000000612644
Theobroma cacao Chromosome_1 6 CH_tca_36 16 21 4.45842e-22
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_731 4 4 0.000678854
Tripterygium wilfordii NC_052248.1 6 CH_twi_160 7 9 0.0000000589476
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_233 8 13 0.000000338864
Vigna mungo CM024078.1 6 CH_vmu_102 10 22 0.00000000183005
Vigna mungo CM024077.1 6 CH_vmu_138 8 13 0.0000000251889
Vigna mungo CM024070.1 6 CH_vmu_75 9 12 0.0000000000551943
Vitis vinifera chr16 6 CH_vvi_727 5 7 0.000621336
Zea mays 9 6 CH_zma_93 8 10 0.0000000003387

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001