Functional clusters
Information
- Type InterPro
- Description MFS transporter superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 5 | CH_acertr_926 | 7 | 40 | 0.00042831 |
| Actinidia chinensis | Lachesis_group0 | 5 | CH_ach_94 | 11 | 62 | 0.000000045833 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 5 | CH_amhyb_159 | 6 | 12 | 0.00000309873 |
| Aquilegia oxysepala | CHR04 | 5 | CH_aox_185 | 5 | 5 | 0.000000747966 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_359 | 4 | 4 | 0.0000961368 |
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 5 | CH_atr_245 | 5 | 5 | 0.000000444824 |
| Amborella trichopoda | AmTr_v1.0_scaffold00009 | 5 | CH_atr_308 | 5 | 7 | 0.00000923265 |
| Brassica carinata | ChrC03 | 5 | CH_bca_780 | 6 | 9 | 0.00000122476 |
| Brassica napus | C05 | 5 | CH_bna_131 | 8 | 8 | 0.000000000000559878 |
| Brassica napus | C02 | 5 | CH_bna_310 | 7 | 9 | 0.00000000289545 |
| Brassica oleracea | C6 | 5 | CH_bol_311 | 5 | 5 | 0.000000580336 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 5 | CH_bvu_386 | 4 | 4 | 0.000150179 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 5 | CH_bvu_65 | 8 | 8 | 0.000000000000866455 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_593 | 8 | 25 | 0.000000552784 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 5 | CH_can_803 | 4 | 5 | 0.000511448 |
| Coffea canephora | chr6 | 5 | CH_ccan_252 | 5 | 31 | 0.00000394668 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_172 | 9 | 15 | 0.000000000054225 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_397 | 7 | 17 | 0.00000249594 |
| Carya illinoinensis | Chr11 | 5 | CH_cil_474 | 6 | 12 | 0.00000556384 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4250 | 5 | CH_cqu_282 | 6 | 6 | 0.0000000317393 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1870 | 5 | CH_cqu_881 | 4 | 4 | 0.000352494 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_858 | 7 | 16 | 0.00000176089 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_1161 | 4 | 5 | 0.000705342 |
| Lupinus albus | Lalb_Chr02 | 5 | CH_lal_470 | 4 | 4 | 0.000153323 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_587 | 8 | 30 | 0.00000337606 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_678 | 10 | 77 | 0.0000293696 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_254 | 9 | 28 | 0.00000000362613 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_1101 | 4 | 6 | 0.000476639 |
| Malus domestica | Chr02 | 5 | CH_mdo_344 | 6 | 6 | 0.00000000791941 |
| Malus domestica | Chr06 | 5 | CH_mdo_513 | 7 | 15 | 0.000000349964 |
| Nicotiana tabacum | Nitab4.5_0000091 | 5 | CH_nta_4 | 16 | 23 | 1.9114e-23 |
| Nicotiana tabacum | Nitab4.5_0000688 | 5 | CH_nta_51 | 7 | 8 | 0.00000000122528 |
| Nicotiana tabacum | Nitab4.5_0001374 | 5 | CH_nta_52 | 9 | 20 | 0.0000000021403 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_550 | 4 | 5 | 0.000124061 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_910 | 4 | 4 | 0.0000854737 |
| Quercus lobata | 4 | 5 | CH_qlo_338 | 12 | 23 | 0.0000000000000704617 |
| Quercus lobata | 11 | 5 | CH_qlo_705 | 7 | 9 | 0.0000000180658 |
| Quercus lobata | 1 | 5 | CH_qlo_755 | 6 | 6 | 0.0000000494839 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_1358 | 6 | 27 | 0.000474774 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_1004 | 4 | 5 | 0.00087988 |
| Simmondsia chinensis | GWHAASQ00000009 | 5 | CH_sci_340 | 4 | 4 | 0.00016334 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_564 | 10 | 20 | 0.00000000000964542 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_653 | 7 | 7 | 0.000000000105275 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_766 | 6 | 20 | 0.000246242 |
| Selaginella moellendorffii | scaffold_21 | 5 | CH_smo_236 | 7 | 33 | 0.000104815 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_528 | 6 | 19 | 0.0000394695 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_563 | 5 | 8 | 0.0000430337 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_443 | 7 | 22 | 0.0000101449 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_565 | 4 | 4 | 0.000206771 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_37 | 13 | 33 | 0.0000000000000111194 |
| Vanilla planifolia | CM028159.1 | 5 | CH_vpl_648 | 4 | 5 | 0.000455682 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_649 | 4 | 5 | 0.000455682 |
| Zea mays | 4 | 5 | CH_zma_215 | 5 | 5 | 0.0000011842 |
| Acer truncatum | chr12 | 6 | CH_acertr_926 | 7 | 40 | 0.00042831 |
| Actinidia chinensis | Lachesis_group0 | 6 | CH_ach_94 | 11 | 62 | 0.000000045833 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 6 | CH_amhyb_159 | 6 | 12 | 0.00000309873 |
| Aquilegia oxysepala | CHR04 | 6 | CH_aox_185 | 5 | 5 | 0.000000747966 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_359 | 4 | 4 | 0.0000961368 |
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 6 | CH_atr_245 | 5 | 5 | 0.000000444824 |
| Amborella trichopoda | AmTr_v1.0_scaffold00009 | 6 | CH_atr_308 | 5 | 7 | 0.00000923265 |
| Brassica carinata | ChrC03 | 6 | CH_bca_780 | 6 | 9 | 0.00000122476 |
| Brassica napus | C05 | 6 | CH_bna_131 | 8 | 8 | 0.000000000000559878 |
| Brassica napus | C02 | 6 | CH_bna_310 | 7 | 9 | 0.00000000289545 |
| Brassica oleracea | C6 | 6 | CH_bol_311 | 5 | 5 | 0.000000580336 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 6 | CH_bvu_386 | 4 | 4 | 0.000150179 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 6 | CH_bvu_65 | 8 | 8 | 0.000000000000866455 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_593 | 8 | 25 | 0.000000552784 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 6 | CH_can_803 | 4 | 5 | 0.000511448 |
| Coffea canephora | chr6 | 6 | CH_ccan_252 | 5 | 31 | 0.00000394668 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_172 | 9 | 15 | 0.000000000054225 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_397 | 7 | 17 | 0.00000249594 |
| Carya illinoinensis | Chr11 | 6 | CH_cil_474 | 6 | 12 | 0.00000556384 |
| Cucumis melo | chr02 | 6 | CH_cme_322 | 5 | 10 | 0.000107157 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4250 | 6 | CH_cqu_282 | 6 | 6 | 0.0000000317393 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1870 | 6 | CH_cqu_881 | 4 | 4 | 0.000352494 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_858 | 7 | 16 | 0.00000176089 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_1161 | 4 | 5 | 0.000705342 |
| Lupinus albus | Lalb_Chr02 | 6 | CH_lal_470 | 4 | 4 | 0.000153323 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_587 | 8 | 30 | 0.00000337606 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_678 | 10 | 77 | 0.0000293696 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_254 | 9 | 28 | 0.00000000362613 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_1101 | 4 | 6 | 0.000476639 |
| Malus domestica | Chr02 | 6 | CH_mdo_344 | 6 | 6 | 0.00000000791941 |
| Malus domestica | Chr06 | 6 | CH_mdo_513 | 7 | 15 | 0.000000349964 |
| Nicotiana tabacum | Nitab4.5_0000091 | 6 | CH_nta_4 | 16 | 23 | 1.9114e-23 |
| Nicotiana tabacum | Nitab4.5_0000688 | 6 | CH_nta_51 | 7 | 8 | 0.00000000122528 |
| Nicotiana tabacum | Nitab4.5_0001374 | 6 | CH_nta_52 | 9 | 20 | 0.0000000021403 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_550 | 4 | 5 | 0.000124061 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_910 | 4 | 4 | 0.0000854737 |
| Quercus lobata | 4 | 6 | CH_qlo_338 | 12 | 23 | 0.0000000000000704617 |
| Quercus lobata | 11 | 6 | CH_qlo_705 | 7 | 9 | 0.0000000180658 |
| Quercus lobata | 1 | 6 | CH_qlo_755 | 6 | 6 | 0.0000000494839 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_1358 | 6 | 27 | 0.000474774 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_1004 | 4 | 5 | 0.00087988 |
| Simmondsia chinensis | GWHAASQ00000009 | 6 | CH_sci_340 | 4 | 4 | 0.00016334 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_564 | 10 | 20 | 0.00000000000964542 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_653 | 7 | 7 | 0.000000000105275 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_766 | 6 | 20 | 0.000246242 |
| Selaginella moellendorffii | scaffold_21 | 6 | CH_smo_236 | 7 | 33 | 0.000104815 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_528 | 6 | 19 | 0.0000394695 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_563 | 5 | 8 | 0.0000430337 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_443 | 7 | 22 | 0.0000101449 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_565 | 4 | 4 | 0.000206771 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_37 | 13 | 33 | 0.0000000000000111194 |
| Vanilla planifolia | CM028159.1 | 6 | CH_vpl_648 | 4 | 5 | 0.000455682 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_649 | 4 | 5 | 0.000455682 |
| Zea mays | 4 | 6 | CH_zma_215 | 5 | 5 | 0.0000011842 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |