Functional clusters
Information
- Type InterPro
- Description Thioredoxin-like superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 5 | CH_acertr_371 | 9 | 47 | 0.0000012556 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_769 | 5 | 6 | 0.0000108447 |
| Brassica carinata | ChrB03 | 5 | CH_bca_1612 | 5 | 9 | 0.000233365 |
| Cicer arietinum L. | Ca_LG4_v3 | 5 | CH_car_110 | 6 | 11 | 0.00000147833 |
| Corylus avellana | 2 | 5 | CH_cav_117 | 12 | 49 | 0.0000000000230321 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 5 | CH_cqu_50 | 17 | 41 | 1.09431e-19 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3298 | 5 | CH_cqu_634 | 6 | 13 | 0.0000429729 |
| Durio zibethinus | NW_019167893.1 | 5 | CH_dzi_393 | 7 | 30 | 0.000056034 |
| Glycine max | Gm02 | 5 | CH_gma_679 | 6 | 17 | 0.000147669 |
| Gossypium raimondii | Chr08 | 5 | CH_gra_651 | 4 | 5 | 0.000700549 |
| Hydrangea macrophylla | Hma1.2p1_0265F.1 | 5 | CH_hma_674 | 4 | 6 | 0.000692912 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_691 | 4 | 4 | 0.0000245568 |
| Malus domestica | Chr03 | 5 | CH_mdo_685 | 9 | 52 | 0.00000529149 |
| Malus domestica | Chr13 | 5 | CH_mdo_803 | 6 | 15 | 0.0000277275 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_173 | 15 | 80 | 0.0000000000353792 |
| Medicago truncatula | chr1 | 5 | CH_mtr_254 | 9 | 16 | 0.00000000000250129 |
| Petunia axillaris | Peaxi162Scf00209 | 5 | CH_pax_576 | 5 | 10 | 0.00021537 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_392 | 5 | 8 | 0.0000375355 |
| Populus trichocarpa | Chr02 | 5 | CH_ptr_225 | 10 | 32 | 0.0000000024151 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_51 | 13 | 20 | 3.28796e-18 |
| Selaginella moellendorffii | scaffold_10 | 5 | CH_smo_240 | 4 | 4 | 0.000120489 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_213 | 10 | 33 | 0.00000000114596 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_443 | 4 | 4 | 0.0000447551 |
| Acer truncatum | chr5 | 6 | CH_acertr_371 | 9 | 47 | 0.0000012556 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_769 | 5 | 6 | 0.0000108447 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1612 | 5 | 9 | 0.000233365 |
| Cicer arietinum L. | Ca_LG4_v3 | 6 | CH_car_110 | 6 | 11 | 0.00000147833 |
| Corylus avellana | 2 | 6 | CH_cav_117 | 12 | 49 | 0.0000000000230321 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 6 | CH_cqu_50 | 17 | 41 | 1.09431e-19 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3298 | 6 | CH_cqu_634 | 6 | 13 | 0.0000429729 |
| Durio zibethinus | NW_019167893.1 | 6 | CH_dzi_393 | 7 | 30 | 0.000056034 |
| Glycine max | Gm02 | 6 | CH_gma_679 | 6 | 17 | 0.000147669 |
| Gossypium raimondii | Chr08 | 6 | CH_gra_651 | 4 | 5 | 0.000700549 |
| Hydrangea macrophylla | Hma1.2p1_0265F.1 | 6 | CH_hma_674 | 4 | 6 | 0.000692912 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_691 | 4 | 4 | 0.0000245568 |
| Malus domestica | Chr03 | 6 | CH_mdo_685 | 9 | 52 | 0.00000529149 |
| Malus domestica | Chr13 | 6 | CH_mdo_803 | 6 | 15 | 0.0000277275 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_173 | 15 | 80 | 0.0000000000353792 |
| Medicago truncatula | chr1 | 6 | CH_mtr_254 | 9 | 16 | 0.00000000000250129 |
| Petunia axillaris | Peaxi162Scf00209 | 6 | CH_pax_576 | 5 | 10 | 0.00021537 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_392 | 5 | 8 | 0.0000375355 |
| Populus trichocarpa | Chr02 | 6 | CH_ptr_225 | 10 | 32 | 0.0000000024151 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_51 | 13 | 20 | 3.28796e-18 |
| Selaginella moellendorffii | scaffold_10 | 6 | CH_smo_240 | 4 | 4 | 0.000120489 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_213 | 10 | 33 | 0.00000000114596 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_443 | 4 | 4 | 0.0000447551 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |