Functional clusters
Information
- Type InterPro
- Description Zinc finger C2H2 superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 5 | CH_amhyb_53 | 6 | 6 | 0.000000000297505 |
| Brassica carinata | ChrC04 | 5 | CH_bca_1164 | 6 | 21 | 0.0000250591 |
| Brassica napus | C09 | 5 | CH_bna_1113 | 4 | 5 | 0.000155522 |
| Brassica oleracea | C9 | 5 | CH_bol_571 | 4 | 5 | 0.0000727903 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_329 | 6 | 21 | 0.00000764763 |
| Glycine max | Gm03 | 5 | CH_gma_772 | 4 | 5 | 0.00026651 |
| Manihot esculenta | Chromosome01 | 5 | CH_mes_476 | 4 | 4 | 0.0000459957 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1315 | 6 | 65 | 0.000575309 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_211 | 8 | 14 | 0.0000000000061705 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_867 | 4 | 5 | 0.0000114597 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1510 | 4 | 8 | 0.0000208816 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_541 | 5 | 12 | 0.0000298466 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 6 | CH_amhyb_53 | 6 | 6 | 0.000000000297505 |
| Brassica carinata | ChrC04 | 6 | CH_bca_1164 | 6 | 21 | 0.0000250591 |
| Brassica napus | C09 | 6 | CH_bna_1113 | 4 | 5 | 0.000155522 |
| Brassica oleracea | C9 | 6 | CH_bol_571 | 4 | 5 | 0.0000727903 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_329 | 6 | 21 | 0.00000764763 |
| Glycine max | Gm03 | 6 | CH_gma_772 | 4 | 5 | 0.00026651 |
| Manihot esculenta | Chromosome01 | 6 | CH_mes_476 | 4 | 4 | 0.0000459957 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1315 | 6 | 65 | 0.000575309 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_211 | 8 | 14 | 0.0000000000061705 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_867 | 4 | 5 | 0.0000114597 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1510 | 4 | 8 | 0.0000208816 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_541 | 5 | 12 | 0.0000298466 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |