Functional clusters
Information
- Type InterPro
- Description FAD/NAD(P)-binding domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 5 | CH_arhy_525 | 6 | 11 | 0.00000025084 |
| Brassica napus | C08 | 5 | CH_bna_1202 | 4 | 6 | 0.000260595 |
| Brassica napus | C09 | 5 | CH_bna_1203 | 4 | 6 | 0.000260595 |
| Brassica napus | A07 | 5 | CH_bna_1466 | 7 | 70 | 0.000762392 |
| Camellia sinensis var. sinensis | Chr3 | 5 | CH_camsi_740 | 5 | 8 | 0.00000431481 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 5 | CH_can_404 | 7 | 29 | 0.00000299917 |
| Capsicum annuum | PGAv.1.6.scaffold681 | 5 | CH_can_597 | 4 | 5 | 0.0000843091 |
| Cicer arietinum L. | Ca_LG4_v3 | 5 | CH_car_69 | 10 | 68 | 0.0000000707718 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_42 | 13 | 16 | 4.60959e-23 |
| Chlamydomonas reinhardtii | chromosome_9 | 5 | CH_cre_23 | 7 | 13 | 0.0000000124131 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_10 | 14 | 14 | 8.5282e-29 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_229 | 11 | 18 | 9.68188e-17 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_676 | 7 | 32 | 0.00000769299 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_9 | 17 | 17 | 8.84667e-36 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_288 | 7 | 10 | 0.000000000200903 |
| Malus domestica | Chr03 | 5 | CH_mdo_153 | 8 | 11 | 0.000000000000995582 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_135 | 6 | 6 | 0.000000000276772 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_575 | 4 | 7 | 0.000453386 |
| Quercus lobata | 12 | 5 | CH_qlo_503 | 7 | 9 | 0.0000000000876879 |
| Quercus lobata | 4 | 5 | CH_qlo_752 | 6 | 9 | 0.0000000426666 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_1295 | 4 | 7 | 0.000385019 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_476 | 6 | 9 | 0.0000000133177 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_561 | 4 | 4 | 0.00000974158 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_2212 | 5 | 11 | 0.000290296 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_605 | 7 | 7 | 0.0000000000303663 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_376 | 4 | 4 | 0.0000282076 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_283 | 4 | 4 | 0.00000961064 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 6 | CH_arhy_525 | 6 | 11 | 0.00000025084 |
| Brassica napus | C08 | 6 | CH_bna_1202 | 4 | 6 | 0.000260595 |
| Brassica napus | C09 | 6 | CH_bna_1203 | 4 | 6 | 0.000260595 |
| Brassica napus | A07 | 6 | CH_bna_1466 | 7 | 70 | 0.000762392 |
| Camellia sinensis var. sinensis | Chr3 | 6 | CH_camsi_740 | 5 | 8 | 0.00000431481 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 6 | CH_can_404 | 7 | 29 | 0.00000299917 |
| Capsicum annuum | PGAv.1.6.scaffold681 | 6 | CH_can_597 | 4 | 5 | 0.0000843091 |
| Cicer arietinum L. | Ca_LG4_v3 | 6 | CH_car_69 | 10 | 68 | 0.0000000707718 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_42 | 13 | 16 | 4.60959e-23 |
| Chlamydomonas reinhardtii | chromosome_9 | 6 | CH_cre_23 | 7 | 13 | 0.0000000124131 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_10 | 14 | 14 | 8.5282e-29 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_229 | 11 | 18 | 9.68188e-17 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_676 | 7 | 32 | 0.00000769299 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_9 | 17 | 17 | 8.84667e-36 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_288 | 7 | 10 | 0.000000000200903 |
| Malus domestica | Chr03 | 6 | CH_mdo_153 | 8 | 11 | 0.000000000000995582 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_135 | 6 | 6 | 0.000000000276772 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_575 | 4 | 7 | 0.000453386 |
| Quercus lobata | 12 | 6 | CH_qlo_503 | 7 | 9 | 0.0000000000876879 |
| Quercus lobata | 4 | 6 | CH_qlo_752 | 6 | 9 | 0.0000000426666 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_1295 | 4 | 7 | 0.000385019 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_476 | 6 | 9 | 0.0000000133177 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_561 | 4 | 4 | 0.00000974158 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_2212 | 5 | 11 | 0.000290296 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_605 | 7 | 7 | 0.0000000000303663 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_376 | 4 | 4 | 0.0000282076 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_283 | 4 | 4 | 0.00000961064 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |