Functional clusters
Information
- Type InterPro
- Description Tryptophan synthase beta subunit-like PLP-dependent enzyme
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr2 | 5 | CH_acertr_448 | 3 | 3 | 0.0000114807 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 5 | CH_amhyb_165 | 3 | 3 | 0.00000483602 |
| Brassica napus | C05 | 5 | CH_bna_723 | 4 | 9 | 0.0000044291 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_1381 | 3 | 6 | 0.000575389 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_506 | 4 | 5 | 0.000000118885 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_714 | 4 | 9 | 0.00000298793 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_51 | 8 | 8 | 2.51983e-21 |
| Corchorus olitorius | AWUE01015649.1 | 5 | CH_col_63 | 4 | 9 | 0.000000329048 |
| Carica papaya | supercontig_117 | 5 | CH_cpa_35 | 5 | 5 | 0.00000000000525009 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_79 | 7 | 14 | 0.00000000000000541383 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_19 | 13 | 33 | 2.44205e-28 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_554 | 3 | 4 | 0.0000180656 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1068 | 4 | 6 | 0.000000123445 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_367 | 3 | 3 | 0.0000199474 |
| Acer truncatum | chr2 | 6 | CH_acertr_448 | 3 | 3 | 0.0000114807 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 6 | CH_amhyb_165 | 3 | 3 | 0.00000483602 |
| Brassica napus | C05 | 6 | CH_bna_723 | 4 | 9 | 0.0000044291 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_1381 | 3 | 6 | 0.000575389 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_506 | 4 | 5 | 0.000000118885 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_714 | 4 | 9 | 0.00000298793 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_51 | 8 | 8 | 2.51983e-21 |
| Corchorus olitorius | AWUE01015649.1 | 6 | CH_col_63 | 4 | 9 | 0.000000329048 |
| Carica papaya | supercontig_117 | 6 | CH_cpa_35 | 5 | 5 | 0.00000000000525009 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_307 | 5 | 13 | 0.0000000764021 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_508 | 4 | 7 | 0.00000239791 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_613 | 4 | 9 | 0.00000862032 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_806 | 3 | 3 | 0.0000781135 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_79 | 7 | 14 | 0.00000000000000541383 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_19 | 13 | 33 | 2.44205e-28 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_554 | 3 | 4 | 0.0000180656 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1068 | 4 | 6 | 0.000000123445 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_367 | 3 | 3 | 0.0000199474 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |