Functional clusters
Information
- Type InterPro
- Description Ricin B-like lectins
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 5 | CH_amhyb_330 | 2 | 2 | 0.000252525 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_21 | 6 | 7 | 1.09759e-16 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_806 | 3 | 11 | 0.0000104022 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_239 | 3 | 4 | 0.000000517376 |
| Ceratophyllum demersum | 7 | 5 | CH_cde_440 | 2 | 2 | 0.000473878 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_154 | 4 | 14 | 0.00000000130414 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_190 | 5 | 16 | 0.0000000000270508 |
| Carica papaya | supercontig_33 | 5 | CH_cpa_127 | 4 | 22 | 0.0000000941402 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_126 | 4 | 4 | 0.00000000415371 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_89 | 5 | 10 | 0.00000000000606489 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_345 | 6 | 21 | 0.00000000000017579 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_158 | 4 | 4 | 0.0000000000810817 |
| Glycine max | Gm05 | 5 | CH_gma_670 | 3 | 11 | 0.000129607 |
| Lupinus albus | Lalb_Chr23 | 5 | CH_lal_370 | 3 | 9 | 0.0000291281 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_636 | 3 | 12 | 0.000181584 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_389 | 3 | 9 | 0.0000237861 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_813 | 2 | 2 | 0.000193592 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_156 | 6 | 45 | 0.00000000000299239 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_447 | 3 | 10 | 0.000059967 |
| Selaginella moellendorffii | scaffold_0 | 5 | CH_smo_146 | 3 | 3 | 0.0000047603 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_718 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr2 | 5 | CH_vvi_385 | 3 | 4 | 0.00000194368 |
| Vitis vinifera | chr19 | 5 | CH_vvi_404 | 3 | 5 | 0.00000485831 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 6 | CH_amhyb_330 | 2 | 2 | 0.000252525 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_21 | 6 | 7 | 1.09759e-16 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_806 | 3 | 11 | 0.0000104022 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_239 | 3 | 4 | 0.000000517376 |
| Ceratophyllum demersum | 7 | 6 | CH_cde_440 | 2 | 2 | 0.000473878 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_154 | 4 | 14 | 0.00000000130414 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_190 | 5 | 16 | 0.0000000000270508 |
| Carica papaya | supercontig_33 | 6 | CH_cpa_127 | 4 | 22 | 0.0000000941402 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_126 | 4 | 4 | 0.00000000415371 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_89 | 5 | 10 | 0.00000000000606489 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_345 | 6 | 21 | 0.00000000000017579 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_158 | 4 | 4 | 0.0000000000810817 |
| Glycine max | Gm05 | 6 | CH_gma_670 | 3 | 11 | 0.000129607 |
| Lupinus albus | Lalb_Chr23 | 6 | CH_lal_370 | 3 | 9 | 0.0000291281 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_636 | 3 | 12 | 0.000181584 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_389 | 3 | 9 | 0.0000237861 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_813 | 2 | 2 | 0.000193592 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_156 | 6 | 45 | 0.00000000000299239 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_447 | 3 | 10 | 0.000059967 |
| Selaginella moellendorffii | scaffold_0 | 6 | CH_smo_146 | 3 | 3 | 0.0000047603 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_718 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr2 | 6 | CH_vvi_385 | 3 | 4 | 0.00000194368 |
| Vitis vinifera | chr19 | 6 | CH_vvi_404 | 3 | 5 | 0.00000485831 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |