Functional clusters
Information
- Type InterPro
- Description Toll/interleukin-1 receptor homology (TIR) domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 5 | CH_aar_86 | 7 | 13 | 0.00000000013805 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_1 | 30 | 66 | 1.34146e-47 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_19 | 22 | 30 | 4.24413e-39 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 5 | CH_arhy_77 | 14 | 20 | 4.82389e-23 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_900 | 4 | 4 | 0.0000611834 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_36 | 13 | 77 | 1.94126e-17 |
| Amborella trichopoda | AmTr_v1.0_scaffold00060 | 5 | CH_atr_604 | 3 | 7 | 0.000509016 |
| Brassica carinata | ChrB01 | 5 | CH_bca_1074 | 4 | 4 | 0.0000124078 |
| Brassica carinata | ChrB07 | 5 | CH_bca_165 | 7 | 8 | 0.00000000000374167 |
| Brassica carinata | ChrB08 | 5 | CH_bca_1830 | 7 | 70 | 0.000467552 |
| Brassica carinata | ChrB05 | 5 | CH_bca_2077 | 4 | 8 | 0.000859188 |
| Brassica napus | C01 | 5 | CH_bna_192 | 8 | 16 | 0.0000000000543372 |
| Brassica napus | A02 | 5 | CH_bna_380 | 6 | 9 | 0.0000000258463 |
| Brassica napus | C07 | 5 | CH_bna_83 | 11 | 26 | 0.00000000000000162894 |
| Brassica oleracea | C7 | 5 | CH_bol_10 | 17 | 48 | 6.56463e-25 |
| Brassica oleracea | C1 | 5 | CH_bol_101 | 8 | 17 | 0.0000000000474508 |
| Brassica rapa | A02 | 5 | CH_bra_52 | 7 | 9 | 0.00000000000471926 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_2 | 30 | 79 | 5.76916e-40 |
| Carya illinoinensis | Chr13 | 5 | CH_cil_372 | 8 | 41 | 0.000000415091 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_64 | 17 | 79 | 1.22241e-19 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_20 | 10 | 13 | 1.19755e-23 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_1123 | 11 | 80 | 0.0000972318 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_1142 | 7 | 22 | 0.000155841 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_33 | 30 | 57 | 1.97503e-38 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_384 | 17 | 79 | 0.00000000000176877 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_981 | 6 | 10 | 0.0000184096 |
| Eutrema salsugineum | scaffold_20 | 5 | CH_esa_11 | 19 | 71 | 7.66382e-26 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_18 | 21 | 64 | 4.07536e-27 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_351 | 10 | 69 | 0.000000294363 |
| Glycine max | Gm06 | 5 | CH_gma_37 | 17 | 78 | 1.64311e-21 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_335 | 5 | 10 | 0.00000000287851 |
| Medicago truncatula | chr4 | 5 | CH_mtr_109 | 18 | 69 | 2.40656e-18 |
| Medicago truncatula | chr6 | 5 | CH_mtr_113 | 16 | 46 | 3.08201e-18 |
| Medicago truncatula | chr5 | 5 | CH_mtr_99 | 14 | 24 | 1.33232e-19 |
| Prunus persica | Pp08 | 5 | CH_ppe_360 | 8 | 34 | 0.000000274816 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_4 | 30 | 65 | 5.71692e-52 |
| Quercus lobata | 9 | 5 | CH_qlo_334 | 16 | 60 | 0.0000000000000674092 |
| Quercus lobata | 4 | 5 | CH_qlo_450 | 12 | 32 | 0.0000000000118023 |
| Quercus lobata | 9 | 5 | CH_qlo_793 | 13 | 80 | 0.000000107693 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_235 | 13 | 59 | 0.000000000000301534 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_651 | 8 | 34 | 0.000000427509 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_280 | 4 | 4 | 0.000000000807043 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1954 | 5 | 6 | 0.000130086 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1955 | 5 | 6 | 0.000130086 |
| Selaginella moellendorffii | scaffold_110 | 5 | CH_smo_227 | 2 | 2 | 0.0000933707 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_2 | 16 | 44 | 6.00294e-27 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_432 | 5 | 13 | 0.00000179244 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_129 | 7 | 20 | 0.0000000187069 |
| Vitis vinifera | chr18 | 5 | CH_vvi_475 | 6 | 70 | 0.0000488754 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_86 | 7 | 13 | 0.00000000013805 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_1 | 30 | 66 | 1.34146e-47 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_19 | 22 | 30 | 4.24413e-39 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 6 | CH_arhy_77 | 14 | 20 | 4.82389e-23 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_900 | 4 | 4 | 0.0000611834 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_36 | 13 | 77 | 1.94126e-17 |
| Amborella trichopoda | AmTr_v1.0_scaffold00060 | 6 | CH_atr_604 | 3 | 7 | 0.000509016 |
| Brassica carinata | ChrB01 | 6 | CH_bca_1074 | 4 | 4 | 0.0000124078 |
| Brassica carinata | ChrB07 | 6 | CH_bca_165 | 7 | 8 | 0.00000000000374167 |
| Brassica carinata | ChrB08 | 6 | CH_bca_1830 | 7 | 70 | 0.000467552 |
| Brassica carinata | ChrB05 | 6 | CH_bca_2077 | 4 | 8 | 0.000859188 |
| Brassica napus | C01 | 6 | CH_bna_192 | 8 | 16 | 0.0000000000543372 |
| Brassica napus | A02 | 6 | CH_bna_380 | 6 | 9 | 0.0000000258463 |
| Brassica napus | C07 | 6 | CH_bna_83 | 11 | 26 | 0.00000000000000162894 |
| Brassica oleracea | C7 | 6 | CH_bol_10 | 17 | 48 | 6.56463e-25 |
| Brassica oleracea | C1 | 6 | CH_bol_101 | 8 | 17 | 0.0000000000474508 |
| Brassica rapa | A02 | 6 | CH_bra_52 | 7 | 9 | 0.00000000000471926 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_2 | 30 | 79 | 5.76916e-40 |
| Carya illinoinensis | Chr13 | 6 | CH_cil_372 | 8 | 41 | 0.000000415091 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_64 | 17 | 79 | 1.22241e-19 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_20 | 10 | 13 | 1.19755e-23 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_1123 | 11 | 80 | 0.0000972318 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_1142 | 7 | 22 | 0.000155841 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_33 | 30 | 57 | 1.97503e-38 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_384 | 17 | 79 | 0.00000000000176877 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_981 | 6 | 10 | 0.0000184096 |
| Eutrema salsugineum | scaffold_20 | 6 | CH_esa_11 | 19 | 71 | 7.66382e-26 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_106 | 13 | 70 | 0.000000000000556288 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_262 | 10 | 63 | 0.0000000179108 |
| Fragaria x ananassa | Fvb3-4 | 6 | CH_fan_39 | 12 | 24 | 7.47385e-18 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_657 | 6 | 19 | 0.0000150718 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_74 | 14 | 66 | 0.00000000000000307709 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_18 | 21 | 64 | 4.07536e-27 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_351 | 10 | 69 | 0.000000294363 |
| Glycine max | Gm06 | 6 | CH_gma_37 | 17 | 78 | 1.64311e-21 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_335 | 5 | 10 | 0.00000000287851 |
| Medicago truncatula | chr4 | 6 | CH_mtr_109 | 18 | 69 | 2.40656e-18 |
| Medicago truncatula | chr6 | 6 | CH_mtr_113 | 16 | 46 | 3.08201e-18 |
| Medicago truncatula | chr5 | 6 | CH_mtr_99 | 14 | 24 | 1.33232e-19 |
| Prunus persica | Pp08 | 6 | CH_ppe_360 | 8 | 34 | 0.000000274816 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_4 | 30 | 65 | 5.71692e-52 |
| Quercus lobata | 9 | 6 | CH_qlo_334 | 16 | 60 | 0.0000000000000674092 |
| Quercus lobata | 4 | 6 | CH_qlo_450 | 12 | 32 | 0.0000000000118023 |
| Quercus lobata | 9 | 6 | CH_qlo_793 | 13 | 80 | 0.000000107693 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_235 | 13 | 59 | 0.000000000000301534 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_651 | 8 | 34 | 0.000000427509 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_280 | 4 | 4 | 0.000000000807043 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1954 | 5 | 6 | 0.000130086 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1955 | 5 | 6 | 0.000130086 |
| Selaginella moellendorffii | scaffold_110 | 6 | CH_smo_227 | 2 | 2 | 0.0000933707 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_2 | 16 | 44 | 6.00294e-27 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_432 | 5 | 13 | 0.00000179244 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_129 | 7 | 20 | 0.0000000187069 |
| Vitis vinifera | chr18 | 6 | CH_vvi_475 | 6 | 70 | 0.0000488754 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |