Functional clusters
Information
- Type InterPro
- Description S-locus-specific glycoprotein/EP1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr2 | 5 | CH_acertr_373 | 3 | 5 | 0.00000149066 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_227 | 3 | 3 | 0.000000130702 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 5 | CH_amhyb_475 | 2 | 2 | 0.000841751 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_108 | 4 | 6 | 0.0000000000740652 |
| Brassica carinata | ChrB03 | 5 | CH_bca_1228 | 3 | 8 | 0.000043726 |
| Brassica carinata | ChrC08 | 5 | CH_bca_718 | 3 | 3 | 0.000000781396 |
| Brassica carinata | ChrB02 | 5 | CH_bca_906 | 3 | 4 | 0.00000312512 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_481 | 3 | 3 | 0.0000000630811 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_408 | 2 | 2 | 0.0000656642 |
| Corylus avellana | 4 | 5 | CH_cav_834 | 2 | 2 | 0.000766695 |
| Coffea canephora | chr5 | 5 | CH_ccan_203 | 3 | 16 | 0.000000533208 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_46 | 8 | 10 | 1.75465e-22 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_177 | 4 | 6 | 0.00000000187196 |
| Carya illinoinensis | Chr12 | 5 | CH_cil_867 | 2 | 2 | 0.000929742 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 5 | CH_cqu_331 | 3 | 4 | 0.000000134699 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_288 | 3 | 4 | 0.000000641451 |
| Daucus carota | DCARv2_Chr8 | 5 | CH_dca_301 | 3 | 3 | 0.00000341687 |
| Durio zibethinus | NW_019167993.1 | 5 | CH_dzi_257 | 3 | 5 | 0.00000112763 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_79 | 4 | 5 | 0.00000000000135533 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_470 | 4 | 5 | 0.000000000105253 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_174 | 4 | 6 | 0.00000000013799 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_538 | 3 | 3 | 0.000000486611 |
| Gossypium hirsutum | D01 | 5 | CH_ghi_539 | 3 | 3 | 0.000000486611 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_296 | 4 | 4 | 0.00000000103614 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_196 | 4 | 5 | 0.000000000142588 |
| Malus domestica | Chr11 | 5 | CH_mdo_317 | 4 | 7 | 0.00000000409225 |
| Manihot esculenta | Chromosome15 | 5 | CH_mes_123 | 5 | 7 | 0.000000000000122623 |
| Punica granatum | NC_045133.1 | 5 | CH_pgr_513 | 2 | 2 | 0.000225107 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_261 | 5 | 11 | 0.000000000105868 |
| Populus trichocarpa | Chr11 | 5 | CH_ptr_231 | 4 | 6 | 0.00000000286672 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_322 | 5 | 13 | 0.0000000000313413 |
| Sechium edule | LG05 | 5 | CH_sed_509 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_2316 | 2 | 2 | 0.000292291 |
| Acer truncatum | chr2 | 6 | CH_acertr_373 | 3 | 5 | 0.00000149066 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_227 | 3 | 3 | 0.000000130702 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 6 | CH_amhyb_475 | 2 | 2 | 0.000841751 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_108 | 4 | 6 | 0.0000000000740652 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1228 | 3 | 8 | 0.000043726 |
| Brassica carinata | ChrC08 | 6 | CH_bca_718 | 3 | 3 | 0.000000781396 |
| Brassica carinata | ChrB02 | 6 | CH_bca_906 | 3 | 4 | 0.00000312512 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_481 | 3 | 3 | 0.0000000630811 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_408 | 2 | 2 | 0.0000656642 |
| Corylus avellana | 4 | 6 | CH_cav_834 | 2 | 2 | 0.000766695 |
| Coffea canephora | chr5 | 6 | CH_ccan_203 | 3 | 16 | 0.000000533208 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_46 | 8 | 10 | 1.75465e-22 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_177 | 4 | 6 | 0.00000000187196 |
| Carya illinoinensis | Chr12 | 6 | CH_cil_867 | 2 | 2 | 0.000929742 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 6 | CH_cqu_331 | 3 | 4 | 0.000000134699 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_288 | 3 | 4 | 0.000000641451 |
| Daucus carota | DCARv2_Chr8 | 6 | CH_dca_301 | 3 | 3 | 0.00000341687 |
| Durio zibethinus | NW_019167993.1 | 6 | CH_dzi_257 | 3 | 5 | 0.00000112763 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_79 | 4 | 5 | 0.00000000000135533 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_470 | 4 | 5 | 0.000000000105253 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_406 | 3 | 4 | 0.00000058749 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_517 | 3 | 6 | 0.00000293699 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_174 | 4 | 6 | 0.00000000013799 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_538 | 3 | 3 | 0.000000486611 |
| Gossypium hirsutum | D01 | 6 | CH_ghi_539 | 3 | 3 | 0.000000486611 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_296 | 4 | 4 | 0.00000000103614 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_196 | 4 | 5 | 0.000000000142588 |
| Malus domestica | Chr11 | 6 | CH_mdo_317 | 4 | 7 | 0.00000000409225 |
| Manihot esculenta | Chromosome15 | 6 | CH_mes_123 | 5 | 7 | 0.000000000000122623 |
| Punica granatum | NC_045133.1 | 6 | CH_pgr_513 | 2 | 2 | 0.000225107 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_261 | 5 | 11 | 0.000000000105868 |
| Populus trichocarpa | Chr11 | 6 | CH_ptr_231 | 4 | 6 | 0.00000000286672 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_322 | 5 | 13 | 0.0000000000313413 |
| Sechium edule | LG05 | 6 | CH_sed_509 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_2316 | 2 | 2 | 0.000292291 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |