Functional clusters
Information
- Type InterPro
- Description Elicitor peptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_239 | 3 | 3 | 0.000000228728 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_290 | 3 | 7 | 0.00000241246 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_81 | 4 | 4 | 0.00000000000493827 |
| Brassica carinata | ChrC03 | 5 | CH_bca_388 | 4 | 8 | 0.00000000794659 |
| Brassica carinata | ChrC01 | 5 | CH_bca_706 | 3 | 3 | 0.000000664186 |
| Brassica carinata | ChrB02 | 5 | CH_bca_707 | 3 | 3 | 0.000000664186 |
| Brassica napus | A06 | 5 | CH_bna_594 | 3 | 3 | 0.00000104602 |
| Brassica napus | C03 | 5 | CH_bna_595 | 3 | 3 | 0.00000104602 |
| Brassica oleracea | C3 | 5 | CH_bol_286 | 3 | 3 | 0.000000352573 |
| Brassica rapa | A06 | 5 | CH_bra_199 | 3 | 3 | 0.000000790707 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_268 | 3 | 3 | 0.000000143334 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_265 | 3 | 3 | 0.000000280668 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_266 | 3 | 3 | 0.000000280668 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_168 | 3 | 3 | 0.0000000869853 |
| Eutrema salsugineum | scaffold_6 | 5 | CH_esa_529 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_762 | 2 | 3 | 0.000530165 |
| Glycine max | Gm04 | 5 | CH_gma_880 | 2 | 2 | 0.000569336 |
| Medicago truncatula | chr6 | 5 | CH_mtr_1291 | 2 | 2 | 0.000410863 |
| Medicago truncatula | chr3 | 5 | CH_mtr_1292 | 2 | 2 | 0.000410863 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_155 | 3 | 3 | 0.0000000139215 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_125 | 3 | 3 | 0.000000325462 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_126 | 3 | 3 | 0.000000325462 |
| Tarenaya hassleriana | NW_010960188.1 | 5 | CH_tha_92 | 3 | 3 | 0.0000000292727 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_239 | 3 | 3 | 0.000000228728 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_290 | 3 | 7 | 0.00000241246 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_81 | 4 | 4 | 0.00000000000493827 |
| Brassica carinata | ChrC03 | 6 | CH_bca_388 | 4 | 8 | 0.00000000794659 |
| Brassica carinata | ChrC01 | 6 | CH_bca_706 | 3 | 3 | 0.000000664186 |
| Brassica carinata | ChrB02 | 6 | CH_bca_707 | 3 | 3 | 0.000000664186 |
| Brassica napus | A06 | 6 | CH_bna_594 | 3 | 3 | 0.00000104602 |
| Brassica napus | C03 | 6 | CH_bna_595 | 3 | 3 | 0.00000104602 |
| Brassica oleracea | C3 | 6 | CH_bol_286 | 3 | 3 | 0.000000352573 |
| Brassica rapa | A06 | 6 | CH_bra_199 | 3 | 3 | 0.000000790707 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_268 | 3 | 3 | 0.000000143334 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_265 | 3 | 3 | 0.000000280668 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_266 | 3 | 3 | 0.000000280668 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_168 | 3 | 3 | 0.0000000869853 |
| Eutrema salsugineum | scaffold_6 | 6 | CH_esa_529 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_762 | 2 | 3 | 0.000530165 |
| Glycine max | Gm04 | 6 | CH_gma_880 | 2 | 2 | 0.000569336 |
| Medicago truncatula | chr6 | 6 | CH_mtr_1291 | 2 | 2 | 0.000410863 |
| Medicago truncatula | chr3 | 6 | CH_mtr_1292 | 2 | 2 | 0.000410863 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_155 | 3 | 3 | 0.0000000139215 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_125 | 3 | 3 | 0.000000325462 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_126 | 3 | 3 | 0.000000325462 |
| Tarenaya hassleriana | NW_010960188.1 | 6 | CH_tha_92 | 3 | 3 | 0.0000000292727 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |