Functional clusters
Information
- Type InterPro
- Description tRNA N6-adenosine threonylcarbamoyltransferase Kae1, archaea and eukaryote
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr6 | 5 | CH_acertr_449 | 3 | 11 | 0.0000122921 |
| Actinidia chinensis | Lachesis_group8 | 5 | CH_ach_310 | 2 | 3 | 0.000162959 |
| Brassica napus | C01 | 5 | CH_bna_54 | 6 | 18 | 2.57635e-17 |
| Brassica oleracea | C1 | 5 | CH_bol_54 | 5 | 14 | 0.0000000000000257065 |
| Camellia sinensis var. sinensis | Contig111 | 5 | CH_camsi_1025 | 3 | 7 | 0.000125688 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_25 | 10 | 20 | 2.16521e-25 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_659 | 4 | 14 | 0.00000139848 |
| Coffea canephora | chr4 | 5 | CH_ccan_290 | 2 | 3 | 0.0000127767 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_470 | 3 | 8 | 0.00000030123 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_726 | 2 | 2 | 0.0000485661 |
| Prunus persica | Pp01 | 5 | CH_ppe_662 | 2 | 3 | 0.00022378 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_427 | 2 | 2 | 0.0000521635 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_1282 | 2 | 3 | 0.000358775 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_2011 | 2 | 2 | 0.000146145 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_424 | 2 | 2 | 0.0000929238 |
| Acer truncatum | chr6 | 6 | CH_acertr_449 | 3 | 11 | 0.0000122921 |
| Actinidia chinensis | Lachesis_group8 | 6 | CH_ach_310 | 2 | 3 | 0.000162959 |
| Brassica napus | C01 | 6 | CH_bna_54 | 6 | 18 | 2.57635e-17 |
| Brassica oleracea | C1 | 6 | CH_bol_54 | 5 | 14 | 0.0000000000000257065 |
| Camellia sinensis var. sinensis | Contig111 | 6 | CH_camsi_1025 | 3 | 7 | 0.000125688 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_25 | 10 | 20 | 2.16521e-25 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_659 | 4 | 14 | 0.00000139848 |
| Coffea canephora | chr4 | 6 | CH_ccan_290 | 2 | 3 | 0.0000127767 |
| Cucumis melo | chr01 | 6 | CH_cme_407 | 2 | 2 | 0.000400267 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_470 | 3 | 8 | 0.00000030123 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_726 | 2 | 2 | 0.0000485661 |
| Prunus persica | Pp01 | 6 | CH_ppe_662 | 2 | 3 | 0.00022378 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_427 | 2 | 2 | 0.0000521635 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_1282 | 2 | 3 | 0.000358775 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_2011 | 2 | 2 | 0.000146145 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_424 | 2 | 2 | 0.0000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |