Functional clusters

Information

  • Type InterPro
  • Description Laccase, third cupredoxin domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR02 5 CH_aox_292 3 5 0.000027575
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_983 3 5 0.00013272
Camellia sinensis var. sinensis Chr10 5 CH_camsi_856 3 3 0.0000188739
Cannabis sativa NC_044375.1 5 CH_cansat_555 3 10 0.000631555
Carpinus fangiana Cfa07 5 CH_cfa_527 3 6 0.000347625
Corchorus olitorius AWUE01015458.1 5 CH_col_234 3 6 0.000928076
Chenopodium quinoa C_Quinoa_Scaffold_1995 5 CH_cqu_548 3 3 0.0000110325
Eucalyptus grandis Chr01 5 CH_egr_258 10 42 0.00000000000000103705
Eutrema salsugineum scaffold_2 5 CH_esa_222 4 14 0.00000240398
Fragaria vesca Fvb6 5 CH_fve_425 4 8 0.00000282661
Gossypium hirsutum A03 5 CH_ghi_1098 3 4 0.000392737
Gossypium hirsutum A04 5 CH_ghi_463 4 4 0.000000104955
Glycine max Gm18 5 CH_gma_584 5 62 0.000064157
Oryza sativa ssp. japonica chr05 5 CH_osa_434 3 4 0.0000257619
Oryza sativa ssp. japonica chr12 5 CH_osa_517 3 5 0.0000643788
Petunia axillaris Peaxi162Scf01149 5 CH_pax_153 4 5 0.0000000202404
Sequoiadendron giganteum chr4 5 CH_sgi_2357 3 3 0.000364313
Selaginella moellendorffii scaffold_2 5 CH_smo_124 3 3 0.00000215783
Selaginella moellendorffii scaffold_2 5 CH_smo_125 3 3 0.00000215783
Solanum tuberosum ST4.03ch05 5 CH_stu_523 3 4 0.0000179565
Solanum tuberosum ST4.03ch09 5 CH_stu_816 3 9 0.000376423
Trochodendron aralioides group1 5 CH_tar_461 3 4 0.0000332904
Tripterygium wilfordii NC_052246.1 5 CH_twi_239 4 9 0.00000234791
Tripterygium wilfordii NC_052254.1 5 CH_twi_433 3 5 0.000230959
Vigna mungo CM024070.1 5 CH_vmu_567 4 39 0.000578783
Vitis vinifera chr8 5 CH_vvi_240 5 9 0.0000000207234
Aquilegia oxysepala CHR02 6 CH_aox_292 3 5 0.000027575
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_983 3 5 0.00013272
Camellia sinensis var. sinensis Chr10 6 CH_camsi_856 3 3 0.0000188739
Cannabis sativa NC_044375.1 6 CH_cansat_555 3 10 0.000631555
Carpinus fangiana Cfa07 6 CH_cfa_527 3 6 0.000347625
Corchorus olitorius AWUE01015458.1 6 CH_col_234 3 6 0.000928076
Chenopodium quinoa C_Quinoa_Scaffold_1995 6 CH_cqu_548 3 3 0.0000110325
Eucalyptus grandis Chr01 6 CH_egr_258 10 42 0.00000000000000103705
Eutrema salsugineum scaffold_2 6 CH_esa_222 4 14 0.00000240398
Fragaria vesca Fvb6 6 CH_fve_425 4 8 0.00000282661
Gossypium hirsutum A03 6 CH_ghi_1098 3 4 0.000392737
Gossypium hirsutum A04 6 CH_ghi_463 4 4 0.000000104955
Glycine max Gm18 6 CH_gma_584 5 62 0.000064157
Oryza sativa ssp. japonica chr05 6 CH_osa_434 3 4 0.0000257619
Oryza sativa ssp. japonica chr12 6 CH_osa_517 3 5 0.0000643788
Petunia axillaris Peaxi162Scf01149 6 CH_pax_153 4 5 0.0000000202404
Sequoiadendron giganteum chr4 6 CH_sgi_2357 3 3 0.000364313
Selaginella moellendorffii scaffold_2 6 CH_smo_124 3 3 0.00000215783
Selaginella moellendorffii scaffold_2 6 CH_smo_125 3 3 0.00000215783
Solanum tuberosum ST4.03ch05 6 CH_stu_523 3 4 0.0000179565
Solanum tuberosum ST4.03ch09 6 CH_stu_816 3 9 0.000376423
Trochodendron aralioides group1 6 CH_tar_461 3 4 0.0000332904
Tripterygium wilfordii NC_052246.1 6 CH_twi_239 4 9 0.00000234791
Tripterygium wilfordii NC_052254.1 6 CH_twi_433 3 5 0.000230959
Vigna mungo CM024070.1 6 CH_vmu_567 4 39 0.000578783
Vitis vinifera chr8 6 CH_vvi_240 5 9 0.0000000207234

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001