Functional clusters
Information
- Type InterPro
- Description Laccase, first cupredoxin domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 5 | CH_acertr_294 | 4 | 6 | 0.000000139464 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_811 | 3 | 3 | 0.0000165922 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_553 | 4 | 6 | 0.000000286213 |
| Corchorus olitorius | AWUE01015448.1 | 5 | CH_col_108 | 3 | 3 | 0.0000366083 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_421 | 3 | 3 | 0.00000694679 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_488 | 3 | 4 | 0.0000277762 |
| Gossypium hirsutum | A06 | 5 | CH_ghi_562 | 4 | 5 | 0.000000729015 |
| Gossypium hirsutum | D06 | 5 | CH_ghi_563 | 4 | 5 | 0.000000729015 |
| Glycine max | Gm18 | 5 | CH_gma_568 | 3 | 4 | 0.0000423555 |
| Gossypium raimondii | Chr12 | 5 | CH_gra_177 | 5 | 6 | 0.000000000635974 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_283 | 4 | 5 | 0.000000449321 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_806 | 3 | 7 | 0.000505779 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_205 | 5 | 6 | 0.000000000769766 |
| Populus trichocarpa | Chr16 | 5 | CH_ptr_515 | 5 | 35 | 0.0000404099 |
| Populus trichocarpa | Chr06 | 5 | CH_ptr_560 | 3 | 3 | 0.0000812603 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_376 | 3 | 3 | 0.0000163896 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_845 | 5 | 28 | 0.00000912679 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_600 | 3 | 4 | 0.000153175 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_672 | 3 | 5 | 0.000382669 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1217 | 4 | 4 | 0.000000577072 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_2346 | 3 | 3 | 0.000303725 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_311 | 8 | 10 | 2.96054e-16 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_515 | 6 | 6 | 0.0000000000020039 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_842 | 3 | 8 | 0.000444661 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_227 | 4 | 5 | 0.0000000166919 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_439 | 3 | 3 | 0.00000682558 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_755 | 3 | 8 | 0.000381489 |
| Trochodendron aralioides | group4 | 5 | CH_tar_192 | 4 | 4 | 0.0000000204285 |
| Trochodendron aralioides | group7 | 5 | CH_tar_574 | 3 | 4 | 0.0000971493 |
| Tripterygium wilfordii | NC_052236.1 | 5 | CH_twi_464 | 5 | 73 | 0.000336348 |
| Tripterygium wilfordii | NC_052234.1 | 5 | CH_twi_87 | 5 | 6 | 0.000000000141047 |
| Acer truncatum | chr8 | 6 | CH_acertr_294 | 4 | 6 | 0.000000139464 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_811 | 3 | 3 | 0.0000165922 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_553 | 4 | 6 | 0.000000286213 |
| Corchorus olitorius | AWUE01015448.1 | 6 | CH_col_108 | 3 | 3 | 0.0000366083 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_421 | 3 | 3 | 0.00000694679 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_488 | 3 | 4 | 0.0000277762 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_340 | 6 | 35 | 0.000000117504 |
| Gossypium hirsutum | A06 | 6 | CH_ghi_562 | 4 | 5 | 0.000000729015 |
| Gossypium hirsutum | D06 | 6 | CH_ghi_563 | 4 | 5 | 0.000000729015 |
| Glycine max | Gm18 | 6 | CH_gma_568 | 3 | 4 | 0.0000423555 |
| Gossypium raimondii | Chr12 | 6 | CH_gra_177 | 5 | 6 | 0.000000000635974 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_283 | 4 | 5 | 0.000000449321 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_806 | 3 | 7 | 0.000505779 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_205 | 5 | 6 | 0.000000000769766 |
| Populus trichocarpa | Chr16 | 6 | CH_ptr_515 | 5 | 35 | 0.0000404099 |
| Populus trichocarpa | Chr06 | 6 | CH_ptr_560 | 3 | 3 | 0.0000812603 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_376 | 3 | 3 | 0.0000163896 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_845 | 5 | 28 | 0.00000912679 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_600 | 3 | 4 | 0.000153175 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_672 | 3 | 5 | 0.000382669 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1217 | 4 | 4 | 0.000000577072 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_2346 | 3 | 3 | 0.000303725 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_311 | 8 | 10 | 2.96054e-16 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_515 | 6 | 6 | 0.0000000000020039 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_842 | 3 | 8 | 0.000444661 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_227 | 4 | 5 | 0.0000000166919 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_439 | 3 | 3 | 0.00000682558 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_755 | 3 | 8 | 0.000381489 |
| Trochodendron aralioides | group4 | 6 | CH_tar_192 | 4 | 4 | 0.0000000204285 |
| Trochodendron aralioides | group7 | 6 | CH_tar_574 | 3 | 4 | 0.0000971493 |
| Tripterygium wilfordii | NC_052236.1 | 6 | CH_twi_464 | 5 | 73 | 0.000336348 |
| Tripterygium wilfordii | NC_052234.1 | 6 | CH_twi_87 | 5 | 6 | 0.000000000141047 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |