Functional clusters
Information
- Type InterPro
- Description Laccase, second cupredoxin domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_50 | 4 | 5 | 0.0000000000387729 |
| Acer truncatum | chr13 | 5 | CH_acertr_249 | 6 | 47 | 0.0000000307373 |
| Actinidia chinensis | Lachesis_group17 | 5 | CH_ach_74 | 4 | 5 | 0.00000000931679 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_233 | 3 | 3 | 0.00000438992 |
| Coffea canephora | chr10 | 5 | CH_ccan_61 | 5 | 30 | 0.0000000000231647 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_574 | 3 | 5 | 0.000114943 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_598 | 3 | 6 | 0.000229755 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_39 | 9 | 15 | 3.58859e-20 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_504 | 5 | 30 | 0.0000130949 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_264 | 7 | 7 | 0.00000000000000155734 |
| Erythranthe guttata | scaffold_10 | 5 | CH_egut_526 | 3 | 5 | 0.000076994 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_530 | 3 | 4 | 0.000359732 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_92 | 6 | 7 | 0.00000000000168322 |
| Prunus persica | Pp08 | 5 | CH_ppe_70 | 9 | 14 | 3.88255e-20 |
| Populus trichocarpa | Chr05 | 5 | CH_ptr_568 | 3 | 3 | 0.0000923305 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_706 | 3 | 4 | 0.000368943 |
| Rhododendron simsii | chr11 | 5 | CH_rsi_83 | 9 | 14 | 6.0069e-20 |
| Vitis vinifera | chr18 | 5 | CH_vvi_335 | 4 | 5 | 0.000000602652 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_50 | 4 | 5 | 0.0000000000387729 |
| Acer truncatum | chr13 | 6 | CH_acertr_249 | 6 | 47 | 0.0000000307373 |
| Actinidia chinensis | Lachesis_group17 | 6 | CH_ach_74 | 4 | 5 | 0.00000000931679 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_233 | 3 | 3 | 0.00000438992 |
| Coffea canephora | chr10 | 6 | CH_ccan_61 | 5 | 30 | 0.0000000000231647 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_574 | 3 | 5 | 0.000114943 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_598 | 3 | 6 | 0.000229755 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_39 | 9 | 15 | 3.58859e-20 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_504 | 5 | 30 | 0.0000130949 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_264 | 7 | 7 | 0.00000000000000155734 |
| Erythranthe guttata | scaffold_10 | 6 | CH_egut_526 | 3 | 5 | 0.000076994 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_530 | 3 | 4 | 0.000359732 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_92 | 6 | 7 | 0.00000000000168322 |
| Prunus persica | Pp08 | 6 | CH_ppe_70 | 9 | 14 | 3.88255e-20 |
| Populus trichocarpa | Chr05 | 6 | CH_ptr_568 | 3 | 3 | 0.0000923305 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_706 | 3 | 4 | 0.000368943 |
| Rhododendron simsii | chr11 | 6 | CH_rsi_83 | 9 | 14 | 6.0069e-20 |
| Vitis vinifera | chr18 | 6 | CH_vvi_335 | 4 | 5 | 0.000000602652 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |