Functional clusters
Information
- Type InterPro
- Description Ascorbate oxidase homologue, second cupredoxin domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 5 | CH_aar_376 | 2 | 2 | 0.000547395 |
| Aethionema arabicum | LG-8 | 5 | CH_aar_377 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_659 | 2 | 2 | 0.000660044 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_660 | 2 | 2 | 0.000660044 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_525 | 2 | 3 | 0.000721742 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_542 | 2 | 2 | 0.000429738 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_543 | 2 | 2 | 0.000429738 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_446 | 2 | 2 | 0.000196993 |
| Corylus avellana | 6 | 5 | CH_cav_709 | 2 | 2 | 0.000460017 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_538 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_764 | 2 | 2 | 0.000691204 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_765 | 2 | 2 | 0.000691204 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 5 | CH_cqu_908 | 2 | 2 | 0.000473821 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 5 | CH_cqu_909 | 2 | 2 | 0.000473821 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_634 | 2 | 2 | 0.000731154 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_635 | 2 | 2 | 0.000731154 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_1349 | 2 | 2 | 0.000585274 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_1350 | 2 | 2 | 0.000585274 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_481 | 2 | 2 | 0.0000728147 |
| Eutrema salsugineum | scaffold_13 | 5 | CH_esa_444 | 2 | 2 | 0.000456899 |
| Eutrema salsugineum | scaffold_7 | 5 | CH_esa_445 | 2 | 2 | 0.000456899 |
| Lupinus albus | Lalb_Chr23 | 5 | CH_lal_578 | 2 | 2 | 0.000314895 |
| Lotus japonicus | chr6 | 5 | CH_lja_585 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr11 | 5 | CH_mdo_1292 | 2 | 2 | 0.000568817 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_600 | 2 | 2 | 0.000750356 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_601 | 2 | 2 | 0.000750356 |
| Prunus persica | Pp06 | 5 | CH_ppe_671 | 2 | 2 | 0.000223789 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_431 | 3 | 3 | 0.0000000426366 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_432 | 3 | 3 | 0.0000000426366 |
| Quercus lobata | 1 | 5 | CH_qlo_837 | 3 | 8 | 0.000000223882 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_1429 | 2 | 3 | 0.000717541 |
| Sechium edule | LG01 | 5 | CH_sed_175 | 3 | 3 | 0.000000267217 |
| Schrenkiella parvula | ch3-1 | 5 | CH_spa_224 | 2 | 2 | 0.000078734 |
| Tarenaya hassleriana | NW_010966725.1 | 5 | CH_tha_289 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052235.1 | 5 | CH_twi_448 | 2 | 2 | 0.000334504 |
| Aethionema arabicum | LG-10 | 6 | CH_aar_376 | 2 | 2 | 0.000547395 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_377 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_659 | 2 | 2 | 0.000660044 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_660 | 2 | 2 | 0.000660044 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_525 | 2 | 3 | 0.000721742 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_542 | 2 | 2 | 0.000429738 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_543 | 2 | 2 | 0.000429738 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_446 | 2 | 2 | 0.000196993 |
| Corylus avellana | 6 | 6 | CH_cav_709 | 2 | 2 | 0.000460017 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_538 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_764 | 2 | 2 | 0.000691204 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_765 | 2 | 2 | 0.000691204 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 6 | CH_cqu_908 | 2 | 2 | 0.000473821 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 6 | CH_cqu_909 | 2 | 2 | 0.000473821 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_634 | 2 | 2 | 0.000731154 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_635 | 2 | 2 | 0.000731154 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_1349 | 2 | 2 | 0.000585274 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_1350 | 2 | 2 | 0.000585274 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_481 | 2 | 2 | 0.0000728147 |
| Eutrema salsugineum | scaffold_13 | 6 | CH_esa_444 | 2 | 2 | 0.000456899 |
| Eutrema salsugineum | scaffold_7 | 6 | CH_esa_445 | 2 | 2 | 0.000456899 |
| Lupinus albus | Lalb_Chr23 | 6 | CH_lal_578 | 2 | 2 | 0.000314895 |
| Lotus japonicus | chr6 | 6 | CH_lja_585 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr11 | 6 | CH_mdo_1292 | 2 | 2 | 0.000568817 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_600 | 2 | 2 | 0.000750356 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_601 | 2 | 2 | 0.000750356 |
| Prunus persica | Pp06 | 6 | CH_ppe_671 | 2 | 2 | 0.000223789 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_431 | 3 | 3 | 0.0000000426366 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_432 | 3 | 3 | 0.0000000426366 |
| Quercus lobata | 1 | 6 | CH_qlo_837 | 3 | 8 | 0.000000223882 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_1429 | 2 | 3 | 0.000717541 |
| Sechium edule | LG01 | 6 | CH_sed_175 | 3 | 3 | 0.000000267217 |
| Schrenkiella parvula | ch3-1 | 6 | CH_spa_224 | 2 | 2 | 0.000078734 |
| Tarenaya hassleriana | NW_010966725.1 | 6 | CH_tha_289 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052235.1 | 6 | CH_twi_448 | 2 | 2 | 0.000334504 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |