Functional clusters

Information

  • Type InterPro
  • Description Ascorbate oxidase, third cupredoxin domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 5 CH_acertr_976 2 2 0.00070497
Arabidopsis thaliana Chr5 5 CH_ath_577 2 7 0.000515661
Brassica carinata ChrC03 5 CH_bca_2121 2 2 0.000961939
Brassica carinata ChrB05 5 CH_bca_2122 2 2 0.000961939
Brassica napus A10 5 CH_bna_1418 2 2 0.00066822
Brassica napus C09 5 CH_bna_524 3 5 0.000000434074
Brassica oleracea C9 5 CH_bol_282 3 5 0.000000320486
Brassica oleracea C2 5 CH_bol_770 2 2 0.000490292
Brassica rapa A10 5 CH_bra_139 3 3 0.0000000552942
Brassica rapa A02 5 CH_bra_559 2 2 0.00064397
Corylus avellana 8 5 CH_cav_162 4 10 0.00000000141921
Coffea canephora chr7 5 CH_ccan_159 3 15 0.0000000495154
Carpinus fangiana Cfa01 5 CH_cfa_157 4 6 0.00000000136806
Cardamine hirsuta Chr6 5 CH_chi_589 2 2 0.000207361
Carya illinoinensis Chr14 5 CH_cil_223 4 6 0.000000000375011
Citrullus lanatus CG_Chr03 5 CH_cla_52 4 6 0.000000000471195
Capsella rubella scaffold_6 5 CH_cru_201 3 3 0.0000000320764
Davidia involucrata GWHABJS00000007 5 CH_din_321 3 6 0.00000131286
Durio zibethinus NW_019168470.1 5 CH_dzi_476 2 2 0.000278093
Eutrema salsugineum scaffold_2 5 CH_esa_327 2 2 0.0000761499
Medicago truncatula chr3 5 CH_mtr_451 3 4 0.0000000101287
Oryza sativa ssp. japonica chr06 5 CH_osa_773 2 4 0.000950537
Papaver somniferum NC_039366.1 5 CH_pso_407 3 3 0.0000000266479
Phaseolus vulgaris Chr06 5 CH_pvu_587 2 2 0.000440836
Rhododendron simsii chr10 5 CH_rsi_36 9 11 2.34615e-28
Salvia bowleyana GWHASIU00000002 5 CH_sbo_401 3 12 0.00000682788
Salix brachista GWHAAZH00000009 5 CH_sbr_589 2 2 0.000378084
Sequoiadendron giganteum chr2 5 CH_sgi_58 11 20 4.93267e-34
Theobroma cacao Chromosome_1 5 CH_tca_386 3 6 0.00000160879
Vitis vinifera chr7 5 CH_vvi_200 4 11 0.00000000217754
Zea mays 7 5 CH_zma_430 2 2 0.000306788
Acer truncatum chr4 6 CH_acertr_976 2 2 0.00070497
Arabidopsis thaliana Chr5 6 CH_ath_577 2 7 0.000515661
Brassica carinata ChrC03 6 CH_bca_2121 2 2 0.000961939
Brassica carinata ChrB05 6 CH_bca_2122 2 2 0.000961939
Brassica napus A10 6 CH_bna_1418 2 2 0.00066822
Brassica napus C09 6 CH_bna_524 3 5 0.000000434074
Brassica oleracea C9 6 CH_bol_282 3 5 0.000000320486
Brassica oleracea C2 6 CH_bol_770 2 2 0.000490292
Brassica rapa A10 6 CH_bra_139 3 3 0.0000000552942
Brassica rapa A02 6 CH_bra_559 2 2 0.00064397
Corylus avellana 8 6 CH_cav_162 4 10 0.00000000141921
Coffea canephora chr7 6 CH_ccan_159 3 15 0.0000000495154
Carpinus fangiana Cfa01 6 CH_cfa_157 4 6 0.00000000136806
Cardamine hirsuta Chr6 6 CH_chi_589 2 2 0.000207361
Carya illinoinensis Chr14 6 CH_cil_223 4 6 0.000000000375011
Citrullus lanatus CG_Chr03 6 CH_cla_52 4 6 0.000000000471195
Cucumis melo chr02 6 CH_cme_159 3 4 0.000000106806
Capsella rubella scaffold_6 6 CH_cru_201 3 3 0.0000000320764
Davidia involucrata GWHABJS00000007 6 CH_din_321 3 6 0.00000131286
Durio zibethinus NW_019168470.1 6 CH_dzi_476 2 2 0.000278093
Eutrema salsugineum scaffold_2 6 CH_esa_327 2 2 0.0000761499
Medicago truncatula chr3 6 CH_mtr_451 3 4 0.0000000101287
Oryza sativa ssp. japonica chr06 6 CH_osa_773 2 4 0.000950537
Papaver somniferum NC_039366.1 6 CH_pso_407 3 3 0.0000000266479
Phaseolus vulgaris Chr06 6 CH_pvu_587 2 2 0.000440836
Rhododendron simsii chr10 6 CH_rsi_36 9 11 2.34615e-28
Salvia bowleyana GWHASIU00000002 6 CH_sbo_401 3 12 0.00000682788
Salix brachista GWHAAZH00000009 6 CH_sbr_589 2 2 0.000378084
Sequoiadendron giganteum chr2 6 CH_sgi_58 11 20 4.93267e-34
Theobroma cacao Chromosome_1 6 CH_tca_386 3 6 0.00000160879
Vitis vinifera chr7 6 CH_vvi_200 4 11 0.00000000217754
Zea mays 7 6 CH_zma_430 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001