Functional clusters
Information
- Type InterPro
- Description Ascorbate oxidase, third cupredoxin domain
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr4 | 5 | CH_acertr_976 | 2 | 2 | 0.00070497 |
Arabidopsis thaliana | Chr5 | 5 | CH_ath_577 | 2 | 7 | 0.000515661 |
Brassica carinata | ChrC03 | 5 | CH_bca_2121 | 2 | 2 | 0.000961939 |
Brassica carinata | ChrB05 | 5 | CH_bca_2122 | 2 | 2 | 0.000961939 |
Brassica napus | A10 | 5 | CH_bna_1418 | 2 | 2 | 0.00066822 |
Brassica napus | C09 | 5 | CH_bna_524 | 3 | 5 | 0.000000434074 |
Brassica oleracea | C9 | 5 | CH_bol_282 | 3 | 5 | 0.000000320486 |
Brassica oleracea | C2 | 5 | CH_bol_770 | 2 | 2 | 0.000490292 |
Brassica rapa | A10 | 5 | CH_bra_139 | 3 | 3 | 0.0000000552942 |
Brassica rapa | A02 | 5 | CH_bra_559 | 2 | 2 | 0.00064397 |
Corylus avellana | 8 | 5 | CH_cav_162 | 4 | 10 | 0.00000000141921 |
Coffea canephora | chr7 | 5 | CH_ccan_159 | 3 | 15 | 0.0000000495154 |
Carpinus fangiana | Cfa01 | 5 | CH_cfa_157 | 4 | 6 | 0.00000000136806 |
Cardamine hirsuta | Chr6 | 5 | CH_chi_589 | 2 | 2 | 0.000207361 |
Carya illinoinensis | Chr14 | 5 | CH_cil_223 | 4 | 6 | 0.000000000375011 |
Citrullus lanatus | CG_Chr03 | 5 | CH_cla_52 | 4 | 6 | 0.000000000471195 |
Capsella rubella | scaffold_6 | 5 | CH_cru_201 | 3 | 3 | 0.0000000320764 |
Davidia involucrata | GWHABJS00000007 | 5 | CH_din_321 | 3 | 6 | 0.00000131286 |
Durio zibethinus | NW_019168470.1 | 5 | CH_dzi_476 | 2 | 2 | 0.000278093 |
Eutrema salsugineum | scaffold_2 | 5 | CH_esa_327 | 2 | 2 | 0.0000761499 |
Medicago truncatula | chr3 | 5 | CH_mtr_451 | 3 | 4 | 0.0000000101287 |
Oryza sativa ssp. japonica | chr06 | 5 | CH_osa_773 | 2 | 4 | 0.000950537 |
Papaver somniferum | NC_039366.1 | 5 | CH_pso_407 | 3 | 3 | 0.0000000266479 |
Phaseolus vulgaris | Chr06 | 5 | CH_pvu_587 | 2 | 2 | 0.000440836 |
Rhododendron simsii | chr10 | 5 | CH_rsi_36 | 9 | 11 | 2.34615e-28 |
Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_401 | 3 | 12 | 0.00000682788 |
Salix brachista | GWHAAZH00000009 | 5 | CH_sbr_589 | 2 | 2 | 0.000378084 |
Sequoiadendron giganteum | chr2 | 5 | CH_sgi_58 | 11 | 20 | 4.93267e-34 |
Theobroma cacao | Chromosome_1 | 5 | CH_tca_386 | 3 | 6 | 0.00000160879 |
Vitis vinifera | chr7 | 5 | CH_vvi_200 | 4 | 11 | 0.00000000217754 |
Zea mays | 7 | 5 | CH_zma_430 | 2 | 2 | 0.000306788 |
Acer truncatum | chr4 | 6 | CH_acertr_976 | 2 | 2 | 0.00070497 |
Arabidopsis thaliana | Chr5 | 6 | CH_ath_577 | 2 | 7 | 0.000515661 |
Brassica carinata | ChrC03 | 6 | CH_bca_2121 | 2 | 2 | 0.000961939 |
Brassica carinata | ChrB05 | 6 | CH_bca_2122 | 2 | 2 | 0.000961939 |
Brassica napus | A10 | 6 | CH_bna_1418 | 2 | 2 | 0.00066822 |
Brassica napus | C09 | 6 | CH_bna_524 | 3 | 5 | 0.000000434074 |
Brassica oleracea | C9 | 6 | CH_bol_282 | 3 | 5 | 0.000000320486 |
Brassica oleracea | C2 | 6 | CH_bol_770 | 2 | 2 | 0.000490292 |
Brassica rapa | A10 | 6 | CH_bra_139 | 3 | 3 | 0.0000000552942 |
Brassica rapa | A02 | 6 | CH_bra_559 | 2 | 2 | 0.00064397 |
Corylus avellana | 8 | 6 | CH_cav_162 | 4 | 10 | 0.00000000141921 |
Coffea canephora | chr7 | 6 | CH_ccan_159 | 3 | 15 | 0.0000000495154 |
Carpinus fangiana | Cfa01 | 6 | CH_cfa_157 | 4 | 6 | 0.00000000136806 |
Cardamine hirsuta | Chr6 | 6 | CH_chi_589 | 2 | 2 | 0.000207361 |
Carya illinoinensis | Chr14 | 6 | CH_cil_223 | 4 | 6 | 0.000000000375011 |
Citrullus lanatus | CG_Chr03 | 6 | CH_cla_52 | 4 | 6 | 0.000000000471195 |
Cucumis melo | chr02 | 6 | CH_cme_159 | 3 | 4 | 0.000000106806 |
Capsella rubella | scaffold_6 | 6 | CH_cru_201 | 3 | 3 | 0.0000000320764 |
Davidia involucrata | GWHABJS00000007 | 6 | CH_din_321 | 3 | 6 | 0.00000131286 |
Durio zibethinus | NW_019168470.1 | 6 | CH_dzi_476 | 2 | 2 | 0.000278093 |
Eutrema salsugineum | scaffold_2 | 6 | CH_esa_327 | 2 | 2 | 0.0000761499 |
Medicago truncatula | chr3 | 6 | CH_mtr_451 | 3 | 4 | 0.0000000101287 |
Oryza sativa ssp. japonica | chr06 | 6 | CH_osa_773 | 2 | 4 | 0.000950537 |
Papaver somniferum | NC_039366.1 | 6 | CH_pso_407 | 3 | 3 | 0.0000000266479 |
Phaseolus vulgaris | Chr06 | 6 | CH_pvu_587 | 2 | 2 | 0.000440836 |
Rhododendron simsii | chr10 | 6 | CH_rsi_36 | 9 | 11 | 2.34615e-28 |
Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_401 | 3 | 12 | 0.00000682788 |
Salix brachista | GWHAAZH00000009 | 6 | CH_sbr_589 | 2 | 2 | 0.000378084 |
Sequoiadendron giganteum | chr2 | 6 | CH_sgi_58 | 11 | 20 | 4.93267e-34 |
Theobroma cacao | Chromosome_1 | 6 | CH_tca_386 | 3 | 6 | 0.00000160879 |
Vitis vinifera | chr7 | 6 | CH_vvi_200 | 4 | 11 | 0.00000000217754 |
Zea mays | 7 | 6 | CH_zma_430 | 2 | 2 | 0.000306788 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |