Functional clusters
Information
- Type InterPro
- Description Cucumisin-like catalytic domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-6 | 5 | CH_aar_304 | 3 | 3 | 0.000177171 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_251 | 4 | 4 | 0.000000340794 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_313 | 4 | 5 | 0.00000170153 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_493 | 3 | 3 | 0.000191217 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_437 | 3 | 4 | 0.000108778 |
| Brassica oleracea | C2 | 5 | CH_bol_390 | 4 | 8 | 0.00000332802 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_267 | 4 | 9 | 0.00000671896 |
| Cannabis sativa | NC_044377.1 | 5 | CH_cansat_382 | 3 | 3 | 0.0000639028 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 5 | CH_can_608 | 4 | 9 | 0.000117736 |
| Capsicum annuum | PGAv.1.6.scaffold1030 | 5 | CH_can_742 | 3 | 3 | 0.000387169 |
| Capsicum annuum | PGAv.1.6.scaffold1194 | 5 | CH_can_743 | 3 | 3 | 0.000387169 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_122 | 4 | 5 | 0.00000223318 |
| Corylus avellana | 11 | 5 | CH_cav_51 | 8 | 13 | 6.00194e-16 |
| Ceratophyllum demersum | 4 | 5 | CH_cde_165 | 3 | 3 | 0.0000273693 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_548 | 3 | 3 | 0.0000949158 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_492 | 3 | 3 | 0.000147744 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_261 | 4 | 8 | 0.00000636921 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_138 | 5 | 7 | 0.00000000356467 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_164 | 7 | 13 | 0.00000000013666 |
| Erythranthe guttata | scaffold_12 | 5 | CH_egut_363 | 4 | 4 | 0.00000282816 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_741 | 3 | 3 | 0.000903203 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_845 | 3 | 5 | 0.000957105 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_117 | 6 | 6 | 0.000000000000449079 |
| Gossypium raimondii | Chr08 | 5 | CH_gra_470 | 3 | 3 | 0.000140155 |
| Lupinus albus | Lalb_Chr20 | 5 | CH_lal_241 | 4 | 4 | 0.000000586926 |
| Lotus japonicus | chr3 | 5 | CH_lja_503 | 3 | 3 | 0.000384405 |
| Lotus japonicus | chr4 | 5 | CH_lja_504 | 3 | 3 | 0.000384405 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1218 | 3 | 3 | 0.000297481 |
| Medicago truncatula | chr4 | 5 | CH_mtr_276 | 6 | 7 | 0.0000000000114663 |
| Medicago truncatula | chr8 | 5 | CH_mtr_747 | 4 | 5 | 0.00000265467 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_617 | 4 | 26 | 0.000733621 |
| Nicotiana tabacum | Nitab4.5_0001200 | 5 | CH_nta_151 | 3 | 3 | 0.0000147379 |
| Quercus lobata | 11 | 5 | CH_qlo_1122 | 4 | 7 | 0.0000156607 |
| Quercus lobata | 8 | 5 | CH_qlo_703 | 5 | 7 | 0.0000000167612 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_554 | 4 | 4 | 0.0000000806442 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_708 | 3 | 3 | 0.00007171 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_390 | 6 | 51 | 0.00000417654 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_534 | 3 | 3 | 0.000111755 |
| Sechium edule | LG07 | 5 | CH_sed_109 | 5 | 6 | 0.00000000334106 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1392 | 5 | 18 | 0.00000399845 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_357 | 4 | 4 | 0.000000556239 |
| Selaginella moellendorffii | scaffold_81 | 5 | CH_smo_107 | 4 | 4 | 0.000000715191 |
| Selaginella moellendorffii | scaffold_43 | 5 | CH_smo_179 | 4 | 7 | 0.000024891 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_304 | 4 | 4 | 0.000000228235 |
| Trochodendron aralioides | group14 | 5 | CH_tar_605 | 3 | 3 | 0.000166831 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_199 | 5 | 5 | 0.000000000457298 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_382 | 4 | 5 | 0.00000135535 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_574 | 3 | 3 | 0.000157704 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 5 | CH_tpr_442 | 4 | 10 | 0.0000442484 |
| Vigna mungo | CM024072.1 | 5 | CH_vmu_400 | 3 | 3 | 0.000155339 |
| Aethionema arabicum | LG-6 | 6 | CH_aar_304 | 3 | 3 | 0.000177171 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_251 | 4 | 4 | 0.000000340794 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_313 | 4 | 5 | 0.00000170153 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_493 | 3 | 3 | 0.000191217 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_437 | 3 | 4 | 0.000108778 |
| Brassica oleracea | C2 | 6 | CH_bol_390 | 4 | 8 | 0.00000332802 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_267 | 4 | 9 | 0.00000671896 |
| Cannabis sativa | NC_044377.1 | 6 | CH_cansat_382 | 3 | 3 | 0.0000639028 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 6 | CH_can_608 | 4 | 9 | 0.000117736 |
| Capsicum annuum | PGAv.1.6.scaffold1030 | 6 | CH_can_742 | 3 | 3 | 0.000387169 |
| Capsicum annuum | PGAv.1.6.scaffold1194 | 6 | CH_can_743 | 3 | 3 | 0.000387169 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_122 | 4 | 5 | 0.00000223318 |
| Corylus avellana | 11 | 6 | CH_cav_51 | 8 | 13 | 6.00194e-16 |
| Ceratophyllum demersum | 4 | 6 | CH_cde_165 | 3 | 3 | 0.0000273693 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_548 | 3 | 3 | 0.0000949158 |
| Cucumis melo | chr10 | 6 | CH_cme_263 | 4 | 10 | 0.0000229366 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_492 | 3 | 3 | 0.000147744 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_261 | 4 | 8 | 0.00000636921 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_138 | 5 | 7 | 0.00000000356467 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_164 | 7 | 13 | 0.00000000013666 |
| Erythranthe guttata | scaffold_12 | 6 | CH_egut_363 | 4 | 4 | 0.00000282816 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_741 | 3 | 3 | 0.000903203 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_845 | 3 | 5 | 0.000957105 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_117 | 6 | 6 | 0.000000000000449079 |
| Gossypium raimondii | Chr08 | 6 | CH_gra_470 | 3 | 3 | 0.000140155 |
| Lupinus albus | Lalb_Chr20 | 6 | CH_lal_241 | 4 | 4 | 0.000000586926 |
| Lotus japonicus | chr3 | 6 | CH_lja_503 | 3 | 3 | 0.000384405 |
| Lotus japonicus | chr4 | 6 | CH_lja_504 | 3 | 3 | 0.000384405 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1218 | 3 | 3 | 0.000297481 |
| Medicago truncatula | chr4 | 6 | CH_mtr_276 | 6 | 7 | 0.0000000000114663 |
| Medicago truncatula | chr8 | 6 | CH_mtr_747 | 4 | 5 | 0.00000265467 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_617 | 4 | 26 | 0.000733621 |
| Nicotiana tabacum | Nitab4.5_0001200 | 6 | CH_nta_151 | 3 | 3 | 0.0000147379 |
| Quercus lobata | 11 | 6 | CH_qlo_1122 | 4 | 7 | 0.0000156607 |
| Quercus lobata | 8 | 6 | CH_qlo_703 | 5 | 7 | 0.0000000167612 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_554 | 4 | 4 | 0.0000000806442 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_708 | 3 | 3 | 0.00007171 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_390 | 6 | 51 | 0.00000417654 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_534 | 3 | 3 | 0.000111755 |
| Sechium edule | LG07 | 6 | CH_sed_109 | 5 | 6 | 0.00000000334106 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1392 | 5 | 18 | 0.00000399845 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_357 | 4 | 4 | 0.000000556239 |
| Selaginella moellendorffii | scaffold_81 | 6 | CH_smo_107 | 4 | 4 | 0.000000715191 |
| Selaginella moellendorffii | scaffold_43 | 6 | CH_smo_179 | 4 | 7 | 0.000024891 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_304 | 4 | 4 | 0.000000228235 |
| Trochodendron aralioides | group14 | 6 | CH_tar_605 | 3 | 3 | 0.000166831 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_199 | 5 | 5 | 0.000000000457298 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_382 | 4 | 5 | 0.00000135535 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_574 | 3 | 3 | 0.000157704 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 6 | CH_tpr_442 | 4 | 10 | 0.0000442484 |
| Vigna mungo | CM024072.1 | 6 | CH_vmu_400 | 3 | 3 | 0.000155339 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |