Functional clusters
Information
- Type InterPro
- Description Pla a 1-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group23 | 5 | CH_ach_542 | 2 | 2 | 0.000543213 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_52 | 5 | 5 | 0.00000000000000298991 |
| Avicennia marina | ScioBoG_19743_HRSCAF_19834 | 5 | CH_ama_239 | 2 | 2 | 0.000862218 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_216 | 3 | 4 | 0.00000216078 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_21 | 7 | 10 | 1.88127e-22 |
| Brassica carinata | ChrC06 | 5 | CH_bca_1377 | 3 | 9 | 0.0000885812 |
| Brassica carinata | ChrC06 | 5 | CH_bca_315 | 5 | 23 | 0.00000000138373 |
| Brassica carinata | ChrC03 | 5 | CH_bca_476 | 4 | 10 | 0.0000000449723 |
| Brassica napus | C07 | 5 | CH_bna_1179 | 3 | 11 | 0.00022141 |
| Brassica napus | A02 | 5 | CH_bna_189 | 5 | 12 | 0.0000000000463286 |
| Brassica napus | A06 | 5 | CH_bna_322 | 4 | 6 | 0.00000000430097 |
| Brassica napus | C02 | 5 | CH_bna_412 | 4 | 10 | 0.000000060172 |
| Brassica oleracea | C2 | 5 | CH_bol_192 | 5 | 50 | 0.000000014295 |
| Brassica oleracea | C7 | 5 | CH_bol_538 | 3 | 10 | 0.0000422712 |
| Brassica rapa | A06 | 5 | CH_bra_111 | 4 | 6 | 0.00000000485863 |
| Brassica rapa | A02 | 5 | CH_bra_71 | 5 | 12 | 0.0000000000605183 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_479 | 2 | 2 | 0.00049675 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_471 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold572 | 5 | CH_can_829 | 2 | 3 | 0.000743443 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_279 | 2 | 2 | 0.000233481 |
| Corylus avellana | 7 | 5 | CH_cav_412 | 3 | 16 | 0.0000197343 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_198 | 4 | 5 | 0.000000000289793 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_209 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_247 | 3 | 3 | 0.000000071667 |
| Citrullus lanatus | CG_Chr06 | 5 | CH_cla_105 | 3 | 3 | 0.000000118051 |
| Carica papaya | supercontig_52 | 5 | CH_cpa_589 | 2 | 2 | 0.000570396 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_27 | 7 | 9 | 1.55977e-20 |
| Cucumis sativus L. | chr6 | 5 | CH_csa_501 | 2 | 2 | 0.000834759 |
| Durio zibethinus | NW_019167827.1 | 5 | CH_dzi_642 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019168381.1 | 5 | CH_dzi_643 | 2 | 2 | 0.000973326 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_339 | 5 | 8 | 0.000000000000103486 |
| Eutrema salsugineum | scaffold_20 | 5 | CH_esa_54 | 5 | 6 | 0.00000000000000908049 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_259 | 4 | 15 | 0.0000000125484 |
| Gossypium hirsutum | A13 | 5 | CH_ghi_125 | 6 | 6 | 4.11108e-17 |
| Gossypium hirsutum | D07 | 5 | CH_ghi_616 | 3 | 3 | 0.00000216462 |
| Gossypium raimondii | Chr01 | 5 | CH_gra_186 | 4 | 4 | 0.00000000110024 |
| Hydrangea macrophylla | Hma1.2p1_0311F.1 | 5 | CH_hma_582 | 2 | 2 | 0.000333259 |
| Lotus japonicus | chr4 | 5 | CH_lja_540 | 2 | 2 | 0.000429046 |
| Malus domestica | Chr10 | 5 | CH_mdo_508 | 3 | 4 | 0.000000301966 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_68 | 5 | 15 | 0.000000000000727256 |
| Olea europaea | chr15 | 5 | CH_oeu_177 | 3 | 4 | 0.000000598306 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_190 | 4 | 13 | 0.0000000383197 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_1067 | 3 | 8 | 0.000303984 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_126 | 7 | 18 | 0.00000000000000272722 |
| Papaver somniferum | NW_020648415.1 | 5 | CH_pso_195 | 6 | 16 | 0.00000000000203112 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_695 | 2 | 2 | 0.000346801 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_260 | 3 | 3 | 0.000000161953 |
| Quercus lobata | CM012294 | 5 | CH_qlo_849 | 4 | 34 | 0.000000286644 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_671 | 3 | 4 | 0.000000533944 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_771 | 3 | 6 | 0.00000266922 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_362 | 3 | 3 | 0.0000000249861 |
| Simmondsia chinensis | GWHAASQ00000007 | 5 | CH_sci_142 | 3 | 3 | 0.000000217487 |
| Sechium edule | LG09 | 5 | CH_sed_508 | 2 | 2 | 0.000713419 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_822 | 2 | 2 | 0.000352164 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_3 | 8 | 8 | 5.32165e-26 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_722 | 2 | 2 | 0.000153736 |
| Trochodendron aralioides | group0 | 5 | CH_tar_966 | 2 | 2 | 0.000900549 |
| Trochodendron aralioides | group15 | 5 | CH_tar_97 | 4 | 4 | 0.00000000000973869 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_756 | 2 | 2 | 0.000732386 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_757 | 2 | 2 | 0.000732386 |
| Tripterygium wilfordii | NC_052251.1 | 5 | CH_twi_536 | 2 | 2 | 0.00083626 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_186 | 3 | 3 | 0.0000000518115 |
| Zea mays | 5 | 5 | CH_zma_281 | 3 | 6 | 0.0000129347 |
| Actinidia chinensis | Lachesis_group23 | 6 | CH_ach_542 | 2 | 2 | 0.000543213 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_52 | 5 | 5 | 0.00000000000000298991 |
| Avicennia marina | ScioBoG_19743_HRSCAF_19834 | 6 | CH_ama_239 | 2 | 2 | 0.000862218 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_216 | 3 | 4 | 0.00000216078 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_21 | 7 | 10 | 1.88127e-22 |
| Brassica carinata | ChrC06 | 6 | CH_bca_1377 | 3 | 9 | 0.0000885812 |
| Brassica carinata | ChrC06 | 6 | CH_bca_315 | 5 | 23 | 0.00000000138373 |
| Brassica carinata | ChrC03 | 6 | CH_bca_476 | 4 | 10 | 0.0000000449723 |
| Brassica napus | C07 | 6 | CH_bna_1179 | 3 | 11 | 0.00022141 |
| Brassica napus | A02 | 6 | CH_bna_189 | 5 | 12 | 0.0000000000463286 |
| Brassica napus | A06 | 6 | CH_bna_322 | 4 | 6 | 0.00000000430097 |
| Brassica napus | C02 | 6 | CH_bna_412 | 4 | 10 | 0.000000060172 |
| Brassica oleracea | C2 | 6 | CH_bol_192 | 5 | 50 | 0.000000014295 |
| Brassica oleracea | C7 | 6 | CH_bol_538 | 3 | 10 | 0.0000422712 |
| Brassica rapa | A06 | 6 | CH_bra_111 | 4 | 6 | 0.00000000485863 |
| Brassica rapa | A02 | 6 | CH_bra_71 | 5 | 12 | 0.0000000000605183 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_479 | 2 | 2 | 0.00049675 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_471 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold572 | 6 | CH_can_829 | 2 | 3 | 0.000743443 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_279 | 2 | 2 | 0.000233481 |
| Corylus avellana | 7 | 6 | CH_cav_412 | 3 | 16 | 0.0000197343 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_198 | 4 | 5 | 0.000000000289793 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_209 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_247 | 3 | 3 | 0.000000071667 |
| Citrullus lanatus | CG_Chr06 | 6 | CH_cla_105 | 3 | 3 | 0.000000118051 |
| Cucumis melo | chr11 | 6 | CH_cme_165 | 3 | 3 | 0.000000133516 |
| Carica papaya | supercontig_52 | 6 | CH_cpa_589 | 2 | 2 | 0.000570396 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_27 | 7 | 9 | 1.55977e-20 |
| Cucumis sativus L. | chr6 | 6 | CH_csa_501 | 2 | 2 | 0.000834759 |
| Durio zibethinus | NW_019167827.1 | 6 | CH_dzi_642 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019168381.1 | 6 | CH_dzi_643 | 2 | 2 | 0.000973326 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_339 | 5 | 8 | 0.000000000000103486 |
| Eutrema salsugineum | scaffold_20 | 6 | CH_esa_54 | 5 | 6 | 0.00000000000000908049 |
| Fragaria x ananassa | Fvb5-3 | 6 | CH_fan_145 | 5 | 17 | 0.0000000000328663 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_392 | 3 | 3 | 0.000000419082 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_259 | 4 | 15 | 0.0000000125484 |
| Gossypium hirsutum | A13 | 6 | CH_ghi_125 | 6 | 6 | 4.11108e-17 |
| Gossypium hirsutum | D07 | 6 | CH_ghi_616 | 3 | 3 | 0.00000216462 |
| Gossypium raimondii | Chr01 | 6 | CH_gra_186 | 4 | 4 | 0.00000000110024 |
| Hydrangea macrophylla | Hma1.2p1_0311F.1 | 6 | CH_hma_582 | 2 | 2 | 0.000333259 |
| Lotus japonicus | chr4 | 6 | CH_lja_540 | 2 | 2 | 0.000429046 |
| Malus domestica | Chr10 | 6 | CH_mdo_508 | 3 | 4 | 0.000000301966 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_68 | 5 | 15 | 0.000000000000727256 |
| Olea europaea | chr15 | 6 | CH_oeu_177 | 3 | 4 | 0.000000598306 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_190 | 4 | 13 | 0.0000000383197 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_1067 | 3 | 8 | 0.000303984 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_126 | 7 | 18 | 0.00000000000000272722 |
| Papaver somniferum | NW_020648415.1 | 6 | CH_pso_195 | 6 | 16 | 0.00000000000203112 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_695 | 2 | 2 | 0.000346801 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_260 | 3 | 3 | 0.000000161953 |
| Quercus lobata | CM012294 | 6 | CH_qlo_849 | 4 | 34 | 0.000000286644 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_671 | 3 | 4 | 0.000000533944 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_771 | 3 | 6 | 0.00000266922 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_362 | 3 | 3 | 0.0000000249861 |
| Simmondsia chinensis | GWHAASQ00000007 | 6 | CH_sci_142 | 3 | 3 | 0.000000217487 |
| Sechium edule | LG09 | 6 | CH_sed_508 | 2 | 2 | 0.000713419 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_822 | 2 | 2 | 0.000352164 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_3 | 8 | 8 | 5.32165e-26 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_722 | 2 | 2 | 0.000153736 |
| Trochodendron aralioides | group0 | 6 | CH_tar_966 | 2 | 2 | 0.000900549 |
| Trochodendron aralioides | group15 | 6 | CH_tar_97 | 4 | 4 | 0.00000000000973869 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_756 | 2 | 2 | 0.000732386 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_757 | 2 | 2 | 0.000732386 |
| Tripterygium wilfordii | NC_052251.1 | 6 | CH_twi_536 | 2 | 2 | 0.00083626 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_186 | 3 | 3 | 0.0000000518115 |
| Zea mays | 5 | 6 | CH_zma_281 | 3 | 6 | 0.0000129347 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |