Functional clusters
Information
- Type InterPro
- Description ATP-binding cassette transporter, PDR-like subfamily G, domain 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_14204_HRSCAF_14270 | 5 | CH_ama_81 | 3 | 4 | 0.00000535141 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 5 | CH_arhy_695 | 3 | 4 | 0.00000365634 |
| Brassica carinata | ChrB02 | 5 | CH_bca_737 | 3 | 3 | 0.000000911628 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_135 | 4 | 4 | 0.00000000115953 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_263 | 5 | 54 | 0.00000130473 |
| Coffea canephora | chr2 | 5 | CH_ccan_644 | 2 | 3 | 0.000511069 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_24 | 10 | 10 | 2.3414e-27 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_452 | 3 | 3 | 0.0000204304 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_155 | 4 | 4 | 0.00000000130463 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_498 | 3 | 4 | 0.0000104854 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_516 | 3 | 5 | 0.0000262053 |
| Davidia involucrata | GWHABJS00000019 | 5 | CH_din_293 | 3 | 3 | 0.000000619075 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_114 | 7 | 65 | 0.0000000000511812 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_437 | 4 | 21 | 0.00000965589 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_274 | 7 | 11 | 0.00000000000000274081 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_201 | 5 | 16 | 0.00000000078786 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_353 | 4 | 4 | 0.00000000205385 |
| Gossypium hirsutum | D05 | 5 | CH_ghi_354 | 4 | 4 | 0.00000000205385 |
| Glycine max | Gm15 | 5 | CH_gma_416 | 3 | 3 | 0.00000176337 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_389 | 3 | 4 | 0.0000229271 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_316 | 5 | 14 | 0.00000000219558 |
| Malus domestica | Chr11 | 5 | CH_mdo_644 | 3 | 3 | 0.00000286889 |
| Manihot esculenta | Chromosome04 | 5 | CH_mes_319 | 5 | 43 | 0.000000433369 |
| Medicago truncatula | chr4 | 5 | CH_mtr_749 | 3 | 3 | 0.00000288669 |
| Nicotiana tabacum | Nitab4.5_0000306 | 5 | CH_nta_251 | 2 | 2 | 0.000329182 |
| Phaseolus vulgaris | Chr05 | 5 | CH_pvu_335 | 3 | 3 | 0.00000294754 |
| Quercus lobata | 6 | 5 | CH_qlo_1316 | 3 | 4 | 0.0000584099 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_304 | 5 | 9 | 0.000000000020433 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_268 | 4 | 5 | 0.0000000221784 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_469 | 3 | 3 | 0.00000795817 |
| Solanum pennellii | Spenn-ch11 | 5 | CH_spe_398 | 3 | 3 | 0.00000338311 |
| Avicennia marina | ScioBoG_14204_HRSCAF_14270 | 6 | CH_ama_81 | 3 | 4 | 0.00000535141 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 6 | CH_arhy_695 | 3 | 4 | 0.00000365634 |
| Brassica carinata | ChrB02 | 6 | CH_bca_737 | 3 | 3 | 0.000000911628 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_135 | 4 | 4 | 0.00000000115953 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_263 | 5 | 54 | 0.00000130473 |
| Coffea canephora | chr2 | 6 | CH_ccan_644 | 2 | 3 | 0.000511069 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_24 | 10 | 10 | 2.3414e-27 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_452 | 3 | 3 | 0.0000204304 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_155 | 4 | 4 | 0.00000000130463 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_498 | 3 | 4 | 0.0000104854 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_516 | 3 | 5 | 0.0000262053 |
| Davidia involucrata | GWHABJS00000019 | 6 | CH_din_293 | 3 | 3 | 0.000000619075 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_114 | 7 | 65 | 0.0000000000511812 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_437 | 4 | 21 | 0.00000965589 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_274 | 7 | 11 | 0.00000000000000274081 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_418 | 4 | 14 | 0.000000776784 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_201 | 5 | 16 | 0.00000000078786 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_353 | 4 | 4 | 0.00000000205385 |
| Gossypium hirsutum | D05 | 6 | CH_ghi_354 | 4 | 4 | 0.00000000205385 |
| Glycine max | Gm15 | 6 | CH_gma_416 | 3 | 3 | 0.00000176337 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_389 | 3 | 4 | 0.0000229271 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_316 | 5 | 14 | 0.00000000219558 |
| Malus domestica | Chr11 | 6 | CH_mdo_644 | 3 | 3 | 0.00000286889 |
| Manihot esculenta | Chromosome04 | 6 | CH_mes_319 | 5 | 43 | 0.000000433369 |
| Medicago truncatula | chr4 | 6 | CH_mtr_749 | 3 | 3 | 0.00000288669 |
| Nicotiana tabacum | Nitab4.5_0000306 | 6 | CH_nta_251 | 2 | 2 | 0.000329182 |
| Phaseolus vulgaris | Chr05 | 6 | CH_pvu_335 | 3 | 3 | 0.00000294754 |
| Quercus lobata | 6 | 6 | CH_qlo_1316 | 3 | 4 | 0.0000584099 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_304 | 5 | 9 | 0.000000000020433 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_268 | 4 | 5 | 0.0000000221784 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_469 | 3 | 3 | 0.00000795817 |
| Solanum pennellii | Spenn-ch11 | 6 | CH_spe_398 | 3 | 3 | 0.00000338311 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |