Functional clusters
Information
- Type InterPro
- Description Non-specific lipid-transfer protein type 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 5 | CH_aar_166 | 3 | 3 | 0.000000436997 |
| Acer truncatum | chr1 | 5 | CH_acertr_733 | 2 | 2 | 0.000211491 |
| Actinidia chinensis | Lachesis_group9 | 5 | CH_ach_495 | 2 | 3 | 0.000488869 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_186 | 4 | 5 | 0.0000000208905 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_397 | 3 | 4 | 0.0000297865 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 5 | CH_amhyb_447 | 2 | 2 | 0.000841751 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 5 | CH_amhyb_448 | 2 | 2 | 0.000841751 |
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_322 | 2 | 2 | 0.0000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_857 | 2 | 2 | 0.0000299383 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_160 | 5 | 23 | 0.00000000446004 |
| Amborella trichopoda | AmTr_v1.0_scaffold00044 | 5 | CH_atr_234 | 3 | 5 | 0.000000378612 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1180 | 3 | 4 | 0.0000292177 |
| Brassica carinata | ChrB03 | 5 | CH_bca_1181 | 3 | 4 | 0.0000292177 |
| Brassica carinata | ChrB07 | 5 | CH_bca_142 | 5 | 5 | 0.00000000000117366 |
| Brassica napus | A02 | 5 | CH_bna_449 | 4 | 7 | 0.0000000999573 |
| Brassica napus | C05 | 5 | CH_bna_776 | 3 | 3 | 0.0000073335 |
| Brassica oleracea | C5 | 5 | CH_bol_388 | 3 | 3 | 0.00000324367 |
| Brassica oleracea | C7 | 5 | CH_bol_389 | 3 | 3 | 0.00000324367 |
| Brassica oleracea | C2 | 5 | CH_bol_865 | 3 | 12 | 0.000711851 |
| Brassica rapa | A02 | 5 | CH_bra_354 | 3 | 5 | 0.0000559175 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_206 | 3 | 5 | 0.000000411226 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_734 | 3 | 5 | 0.00000378378 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 5 | CH_can_340 | 3 | 3 | 0.000000573281 |
| Coffea canephora | chr7 | 5 | CH_ccan_119 | 3 | 5 | 0.00000000544142 |
| Coffea canephora | chr4 | 5 | CH_ccan_400 | 2 | 2 | 0.0000638836 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_296 | 3 | 3 | 0.000000100941 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_201 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_289 | 4 | 10 | 0.000000283436 |
| Carya illinoinensis | Chr03 | 5 | CH_cil_798 | 2 | 2 | 0.000619828 |
| Citrullus lanatus | CG_Chr07 | 5 | CH_cla_277 | 2 | 2 | 0.000266134 |
| Carica papaya | supercontig_170 | 5 | CH_cpa_441 | 2 | 3 | 0.000285185 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 5 | CH_cqu_361 | 3 | 3 | 0.000000282885 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 5 | CH_cqu_90 | 5 | 5 | 0.00000000000000476378 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_337 | 3 | 3 | 0.00000364869 |
| Cucumis sativus L. | chr4 | 5 | CH_csa_118 | 4 | 5 | 0.00000000287888 |
| Durio zibethinus | NW_019167893.1 | 5 | CH_dzi_93 | 4 | 5 | 0.0000000000522724 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_277 | 3 | 3 | 0.000000169139 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1398 | 2 | 2 | 0.000877912 |
| Erythranthe guttata | scaffold_12 | 5 | CH_egut_292 | 3 | 3 | 0.000000159065 |
| Eutrema salsugineum | scaffold_14 | 5 | CH_esa_126 | 4 | 4 | 0.00000000405415 |
| Eutrema salsugineum | scaffold_6 | 5 | CH_esa_295 | 3 | 4 | 0.0000283788 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_193 | 5 | 5 | 0.000000000000374721 |
| Gossypium hirsutum | D12 | 5 | CH_ghi_194 | 5 | 5 | 0.000000000000374721 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_336 | 4 | 4 | 0.00000000116942 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_169 | 5 | 5 | 0.000000000000710916 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_361 | 4 | 5 | 0.00000000919499 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_634 | 3 | 3 | 0.00000453366 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_635 | 3 | 3 | 0.00000453366 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_216 | 4 | 5 | 0.000000000672158 |
| Magnolia biondii | Chr09 | 5 | CH_mbi_446 | 3 | 4 | 0.000000283024 |
| Manihot esculenta | Chromosome02 | 5 | CH_mes_331 | 3 | 3 | 0.000000671187 |
| Manihot esculenta | Chromosome01 | 5 | CH_mes_332 | 3 | 3 | 0.000000671187 |
| Olea europaea | chr14 | 5 | CH_oeu_426 | 2 | 2 | 0.000160137 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_81 | 5 | 5 | 0.0000000000000462162 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_549 | 2 | 2 | 0.000450214 |
| Prunus persica | Pp03 | 5 | CH_ppe_748 | 2 | 2 | 0.000447577 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_876 | 2 | 3 | 0.0000675874 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_667 | 2 | 2 | 0.000734727 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1349 | 3 | 20 | 0.0000910339 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_1098 | 2 | 2 | 0.000119596 |
| Rhododendron simsii | chr10 | 5 | CH_rsi_27 | 13 | 25 | 8.37906e-33 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_353 | 4 | 5 | 0.0000000241153 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_430 | 4 | 77 | 0.0000133084 |
| Sechium edule | LG06 | 5 | CH_sed_220 | 4 | 23 | 0.00000201791 |
| Sechium edule | LG06 | 5 | CH_sed_241 | 3 | 4 | 0.00000366388 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_71 | 6 | 8 | 3.68661e-17 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_9 | 10 | 13 | 1.38326e-30 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_128 | 5 | 7 | 0.0000000000000608236 |
| Tarenaya hassleriana | NW_010961290.1 | 5 | CH_tha_44 | 4 | 4 | 0.0000000000357832 |
| Vitis vinifera | chr14 | 5 | CH_vvi_565 | 2 | 3 | 0.00022818 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_166 | 3 | 3 | 0.000000436997 |
| Acer truncatum | chr1 | 6 | CH_acertr_733 | 2 | 2 | 0.000211491 |
| Actinidia chinensis | Lachesis_group9 | 6 | CH_ach_495 | 2 | 3 | 0.000488869 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_186 | 4 | 5 | 0.0000000208905 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_397 | 3 | 4 | 0.0000297865 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 6 | CH_amhyb_447 | 2 | 2 | 0.000841751 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 6 | CH_amhyb_448 | 2 | 2 | 0.000841751 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_322 | 2 | 2 | 0.0000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_857 | 2 | 2 | 0.0000299383 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_160 | 5 | 23 | 0.00000000446004 |
| Amborella trichopoda | AmTr_v1.0_scaffold00044 | 6 | CH_atr_234 | 3 | 5 | 0.000000378612 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1180 | 3 | 4 | 0.0000292177 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1181 | 3 | 4 | 0.0000292177 |
| Brassica carinata | ChrB07 | 6 | CH_bca_142 | 5 | 5 | 0.00000000000117366 |
| Brassica napus | A02 | 6 | CH_bna_449 | 4 | 7 | 0.0000000999573 |
| Brassica napus | C05 | 6 | CH_bna_776 | 3 | 3 | 0.0000073335 |
| Brassica oleracea | C5 | 6 | CH_bol_388 | 3 | 3 | 0.00000324367 |
| Brassica oleracea | C7 | 6 | CH_bol_389 | 3 | 3 | 0.00000324367 |
| Brassica oleracea | C2 | 6 | CH_bol_865 | 3 | 12 | 0.000711851 |
| Brassica rapa | A02 | 6 | CH_bra_354 | 3 | 5 | 0.0000559175 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_206 | 3 | 5 | 0.000000411226 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_734 | 3 | 5 | 0.00000378378 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 6 | CH_can_340 | 3 | 3 | 0.000000573281 |
| Coffea canephora | chr7 | 6 | CH_ccan_119 | 3 | 5 | 0.00000000544142 |
| Coffea canephora | chr4 | 6 | CH_ccan_400 | 2 | 2 | 0.0000638836 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_296 | 3 | 3 | 0.000000100941 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_201 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_289 | 4 | 10 | 0.000000283436 |
| Carya illinoinensis | Chr03 | 6 | CH_cil_798 | 2 | 2 | 0.000619828 |
| Citrullus lanatus | CG_Chr07 | 6 | CH_cla_277 | 2 | 2 | 0.000266134 |
| Carica papaya | supercontig_170 | 6 | CH_cpa_441 | 2 | 3 | 0.000285185 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 6 | CH_cqu_361 | 3 | 3 | 0.000000282885 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 6 | CH_cqu_90 | 5 | 5 | 0.00000000000000476378 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_337 | 3 | 3 | 0.00000364869 |
| Cucumis sativus L. | chr4 | 6 | CH_csa_118 | 4 | 5 | 0.00000000287888 |
| Durio zibethinus | NW_019167893.1 | 6 | CH_dzi_93 | 4 | 5 | 0.0000000000522724 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_277 | 3 | 3 | 0.000000169139 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1398 | 2 | 2 | 0.000877912 |
| Erythranthe guttata | scaffold_12 | 6 | CH_egut_292 | 3 | 3 | 0.000000159065 |
| Eutrema salsugineum | scaffold_14 | 6 | CH_esa_126 | 4 | 4 | 0.00000000405415 |
| Eutrema salsugineum | scaffold_6 | 6 | CH_esa_295 | 3 | 4 | 0.0000283788 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_193 | 5 | 5 | 0.000000000000374721 |
| Gossypium hirsutum | D12 | 6 | CH_ghi_194 | 5 | 5 | 0.000000000000374721 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_336 | 4 | 4 | 0.00000000116942 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_169 | 5 | 5 | 0.000000000000710916 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_361 | 4 | 5 | 0.00000000919499 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_634 | 3 | 3 | 0.00000453366 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_635 | 3 | 3 | 0.00000453366 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_216 | 4 | 5 | 0.000000000672158 |
| Magnolia biondii | Chr09 | 6 | CH_mbi_446 | 3 | 4 | 0.000000283024 |
| Manihot esculenta | Chromosome02 | 6 | CH_mes_331 | 3 | 3 | 0.000000671187 |
| Manihot esculenta | Chromosome01 | 6 | CH_mes_332 | 3 | 3 | 0.000000671187 |
| Olea europaea | chr14 | 6 | CH_oeu_426 | 2 | 2 | 0.000160137 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_81 | 5 | 5 | 0.0000000000000462162 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_549 | 2 | 2 | 0.000450214 |
| Prunus persica | Pp03 | 6 | CH_ppe_748 | 2 | 2 | 0.000447577 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_876 | 2 | 3 | 0.0000675874 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_667 | 2 | 2 | 0.000734727 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1349 | 3 | 20 | 0.0000910339 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_1098 | 2 | 2 | 0.000119596 |
| Rhododendron simsii | chr10 | 6 | CH_rsi_27 | 13 | 25 | 8.37906e-33 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_353 | 4 | 5 | 0.0000000241153 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_430 | 4 | 77 | 0.0000133084 |
| Sechium edule | LG06 | 6 | CH_sed_220 | 4 | 23 | 0.00000201791 |
| Sechium edule | LG06 | 6 | CH_sed_241 | 3 | 4 | 0.00000366388 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_71 | 6 | 8 | 3.68661e-17 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_9 | 10 | 13 | 1.38326e-30 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_128 | 5 | 7 | 0.0000000000000608236 |
| Tarenaya hassleriana | NW_010961290.1 | 6 | CH_tha_44 | 4 | 4 | 0.0000000000357832 |
| Vitis vinifera | chr14 | 6 | CH_vvi_565 | 2 | 3 | 0.00022818 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |