Functional clusters
Information
- Type InterPro
- Description Jacalin-like lectin domain, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 5 | CH_aar_41 | 7 | 8 | 4.22454e-17 |
| Acer truncatum | chr13 | 5 | CH_acertr_163 | 4 | 4 | 0.00000000191316 |
| Acer truncatum | chr1 | 5 | CH_acertr_215 | 5 | 22 | 0.000000021183 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_15 | 10 | 11 | 6.45927e-25 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 5 | CH_amhyb_295 | 2 | 2 | 0.000252525 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_28 | 9 | 19 | 4.19513e-20 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_29 | 10 | 43 | 4.3206e-19 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_449 | 3 | 5 | 0.000162909 |
| Amborella trichopoda | AmTr_v1.0_scaffold00036 | 5 | CH_atr_216 | 3 | 3 | 0.000000189332 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 5 | CH_atr_312 | 3 | 8 | 0.0000105958 |
| Brassica carinata | ChrB06 | 5 | CH_bca_118 | 7 | 20 | 0.000000000000252458 |
| Brassica carinata | ChrC08 | 5 | CH_bca_159 | 6 | 11 | 0.00000000000256992 |
| Brassica carinata | ChrC05 | 5 | CH_bca_834 | 4 | 9 | 0.00000192211 |
| Brassica napus | C04 | 5 | CH_bna_1162 | 3 | 4 | 0.000189832 |
| Brassica napus | A01 | 5 | CH_bna_181 | 5 | 5 | 0.0000000000258503 |
| Brassica napus | C03 | 5 | CH_bna_475 | 4 | 5 | 0.000000176178 |
| Brassica napus | A08 | 5 | CH_bna_598 | 5 | 24 | 0.00000108602 |
| Brassica napus | A04 | 5 | CH_bna_606 | 4 | 7 | 0.00000123177 |
| Brassica oleracea | C3 | 5 | CH_bol_650 | 3 | 6 | 0.000191572 |
| Brassica rapa | A06 | 5 | CH_bra_68 | 5 | 6 | 0.0000000000362663 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_153 | 3 | 3 | 0.0000000411285 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_210 | 3 | 5 | 0.000000129358 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_750 | 2 | 3 | 0.000738229 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_142 | 5 | 5 | 0.000000000064552 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_22 | 10 | 11 | 7.1395e-25 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_43 | 8 | 8 | 7.19027e-20 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_736 | 2 | 2 | 0.000371897 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1566 | 5 | CH_cqu_1051 | 2 | 2 | 0.000995025 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_30 | 8 | 8 | 4.88908e-20 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_112 | 5 | 12 | 0.0000000000481548 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_400 | 3 | 4 | 0.00000439671 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_714 | 2 | 2 | 0.000728147 |
| Eutrema salsugineum | scaffold_13 | 5 | CH_esa_56 | 6 | 6 | 0.0000000000000132695 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_364 | 3 | 3 | 0.000000437284 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_252 | 5 | 7 | 0.000000000132279 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_577 | 4 | 10 | 0.00000213494 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_312 | 4 | 4 | 0.00000000117284 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_27 | 13 | 65 | 3.12155e-25 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_534 | 3 | 3 | 0.0000129833 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_892 | 2 | 2 | 0.000145698 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_490 | 2 | 2 | 0.00028901 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_121 | 7 | 77 | 0.000000000113901 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_354 | 3 | 4 | 0.0000122929 |
| Physcomitrium patens | Chr18 | 5 | CH_ppa_290 | 2 | 2 | 0.000367636 |
| Quercus lobata | CM012294 | 5 | CH_qlo_582 | 4 | 6 | 0.00000000130021 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_1053 | 3 | 14 | 0.0000728024 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_775 | 3 | 57 | 0.000905785 |
| Sechium edule | LG13 | 5 | CH_sed_110 | 4 | 4 | 0.00000000422266 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_871 | 2 | 2 | 0.000586941 |
| Schrenkiella parvula | ch1-2 | 5 | CH_spa_96 | 4 | 6 | 0.0000000399447 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_898 | 2 | 2 | 0.000768679 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_899 | 2 | 2 | 0.000768679 |
| Tarenaya hassleriana | NW_010966021.1 | 5 | CH_tha_11 | 7 | 7 | 2.91153e-19 |
| Tarenaya hassleriana | NW_010961290.1 | 5 | CH_tha_64 | 5 | 11 | 0.000000000704999 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_237 | 3 | 3 | 0.00000045335 |
| Vitis vinifera | chr9 | 5 | CH_vvi_582 | 2 | 2 | 0.000228189 |
| Aethionema arabicum | LG-10 | 6 | CH_aar_41 | 7 | 8 | 4.22454e-17 |
| Acer truncatum | chr13 | 6 | CH_acertr_163 | 4 | 4 | 0.00000000191316 |
| Acer truncatum | chr1 | 6 | CH_acertr_215 | 5 | 22 | 0.000000021183 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_15 | 10 | 11 | 6.45927e-25 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 6 | CH_amhyb_295 | 2 | 2 | 0.000252525 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_28 | 9 | 19 | 4.19513e-20 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_29 | 10 | 43 | 4.3206e-19 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_449 | 3 | 5 | 0.000162909 |
| Amborella trichopoda | AmTr_v1.0_scaffold00036 | 6 | CH_atr_216 | 3 | 3 | 0.000000189332 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 6 | CH_atr_312 | 3 | 8 | 0.0000105958 |
| Brassica carinata | ChrB06 | 6 | CH_bca_118 | 7 | 20 | 0.000000000000252458 |
| Brassica carinata | ChrC08 | 6 | CH_bca_159 | 6 | 11 | 0.00000000000256992 |
| Brassica carinata | ChrC05 | 6 | CH_bca_834 | 4 | 9 | 0.00000192211 |
| Brassica napus | C04 | 6 | CH_bna_1162 | 3 | 4 | 0.000189832 |
| Brassica napus | A01 | 6 | CH_bna_181 | 5 | 5 | 0.0000000000258503 |
| Brassica napus | C03 | 6 | CH_bna_475 | 4 | 5 | 0.000000176178 |
| Brassica napus | A08 | 6 | CH_bna_598 | 5 | 24 | 0.00000108602 |
| Brassica napus | A04 | 6 | CH_bna_606 | 4 | 7 | 0.00000123177 |
| Brassica oleracea | C3 | 6 | CH_bol_650 | 3 | 6 | 0.000191572 |
| Brassica rapa | A06 | 6 | CH_bra_68 | 5 | 6 | 0.0000000000362663 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_153 | 3 | 3 | 0.0000000411285 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_210 | 3 | 5 | 0.000000129358 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_750 | 2 | 3 | 0.000738229 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_142 | 5 | 5 | 0.000000000064552 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_22 | 10 | 11 | 7.1395e-25 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_43 | 8 | 8 | 7.19027e-20 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_736 | 2 | 2 | 0.000371897 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1566 | 6 | CH_cqu_1051 | 2 | 2 | 0.000995025 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_30 | 8 | 8 | 4.88908e-20 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_112 | 5 | 12 | 0.0000000000481548 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_400 | 3 | 4 | 0.00000439671 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_714 | 2 | 2 | 0.000728147 |
| Eutrema salsugineum | scaffold_13 | 6 | CH_esa_56 | 6 | 6 | 0.0000000000000132695 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_364 | 3 | 3 | 0.000000437284 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_252 | 5 | 7 | 0.000000000132279 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_577 | 4 | 10 | 0.00000213494 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_312 | 4 | 4 | 0.00000000117284 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_27 | 13 | 65 | 3.12155e-25 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_534 | 3 | 3 | 0.0000129833 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_892 | 2 | 2 | 0.000145698 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_490 | 2 | 2 | 0.00028901 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_121 | 7 | 77 | 0.000000000113901 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_354 | 3 | 4 | 0.0000122929 |
| Physcomitrium patens | Chr18 | 6 | CH_ppa_290 | 2 | 2 | 0.000367636 |
| Quercus lobata | CM012294 | 6 | CH_qlo_582 | 4 | 6 | 0.00000000130021 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_1053 | 3 | 14 | 0.0000728024 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_775 | 3 | 57 | 0.000905785 |
| Sechium edule | LG13 | 6 | CH_sed_110 | 4 | 4 | 0.00000000422266 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_871 | 2 | 2 | 0.000586941 |
| Schrenkiella parvula | ch1-2 | 6 | CH_spa_96 | 4 | 6 | 0.0000000399447 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_898 | 2 | 2 | 0.000768679 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_899 | 2 | 2 | 0.000768679 |
| Tarenaya hassleriana | NW_010966021.1 | 6 | CH_tha_11 | 7 | 7 | 2.91153e-19 |
| Tarenaya hassleriana | NW_010961290.1 | 6 | CH_tha_64 | 5 | 11 | 0.000000000704999 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_237 | 3 | 3 | 0.00000045335 |
| Vitis vinifera | chr9 | 6 | CH_vvi_582 | 2 | 2 | 0.000228189 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |