Functional clusters

Information

  • Type InterPro
  • Description Ribonuclease T2, eukaryotic

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 5 CH_aly_587 2 2 0.000396027
Avicennia marina ScioBoG_102831_HRSCAF_103044 5 CH_ama_188 2 2 0.000517331
Aquilegia oxysepala CHR03 5 CH_aox_406 2 2 0.000240597
Arabidopsis thaliana Chr1 5 CH_ath_509 2 2 0.000286492
Brassica napus A09 5 CH_bna_464 3 3 0.000000147807
Brassica oleracea C8 5 CH_bol_838 2 2 0.000686409
Brassica rapa A09 5 CH_bra_161 3 3 0.000000154824
Beta vulgaris Chr6_EL10_PGA_scaffold0 5 CH_bvu_24 6 6 8.75583e-20
Cannabis sativa NC_044370.1 5 CH_cansat_364 3 13 0.0000369569
Cannabis sativa NC_044379.1 5 CH_cansat_604 2 2 0.000984963
Coffea canephora chr11 5 CH_ccan_18 5 12 9.02793e-16
Citrus clementina scaffold_4 5 CH_ccl_508 2 2 0.0000820311
Carpinus fangiana Cfa03 5 CH_cfa_599 2 2 0.000757346
Cardamine hirsuta Chr1 5 CH_chi_687 2 2 0.000414723
Corchorus olitorius AWUE01018132.1 5 CH_col_127 2 2 0.000292099
Carica papaya supercontig_128 5 CH_cpa_28 4 4 0.00000000000257786
Chenopodium quinoa C_Quinoa_Scaffold_1214 5 CH_cqu_14 10 10 1.66062e-31
Capsella rubella scaffold_1 5 CH_cru_576 2 2 0.000438693
Cucumis sativus L. chr3 5 CH_csa_252 4 24 0.00000387565
Daucus carota DCARv2_Chr9 5 CH_dca_667 2 2 0.000637775
Eucalyptus grandis Chr07 5 CH_egr_639 3 3 0.0000000205534
Erythranthe guttata scaffold_12 5 CH_egut_644 2 2 0.000436888
Fragaria vesca Fvb4 5 CH_fve_821 2 2 0.000883652
Gossypium hirsutum A12 5 CH_ghi_1329 2 2 0.000961256
Gossypium hirsutum D12 5 CH_ghi_1330 2 2 0.000961256
Gossypium raimondii Chr08 5 CH_gra_613 2 2 0.000536107
Helianthus annuus HanXRQChr08 5 CH_han_249 5 25 0.000000000111769
Lupinus albus Lalb_Chr17 5 CH_lal_749 2 2 0.000787236
Lotus japonicus chr2 5 CH_lja_459 2 2 0.000214523
Lonicera japonica GWHAAZE00000006 5 CH_lonja_709 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_316 3 3 0.0000000396314
Malus domestica Chr16 5 CH_mdo_1381 2 2 0.000796344
Manihot esculenta Chromosome05 5 CH_mes_616 2 2 0.000366379
Medicago truncatula chr5 5 CH_mtr_161 6 9 0.00000000000000110715
Oryza sativa ssp. japonica chr01 5 CH_osa_744 2 2 0.000792184
Petunia axillaris Peaxi162Scf00222 5 CH_pax_90 4 4 0.0000000000731412
Punica granatum NC_045132.1 5 CH_pgr_583 2 3 0.000675279
Prunus persica Pp01 5 CH_ppe_829 2 2 0.000745962
Pisum sativum chr2LG1 5 CH_psa_64 5 6 0.0000000000000186593
Papaver somniferum NW_020622713.1 5 CH_pso_304 4 9 0.000000000907468
Populus trichocarpa Chr08 5 CH_ptr_664 2 2 0.000346801
Salix brachista GWHAAZH00000008 5 CH_sbr_520 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000004 5 CH_sci_269 2 2 0.0000851426
Sechium edule LG08 5 CH_sed_312 3 8 0.0000704573
Sequoiadendron giganteum chr5 5 CH_sgi_2525 2 2 0.000730727
Sequoiadendron giganteum chr2 5 CH_sgi_2526 2 2 0.000730727
Sequoiadendron giganteum chr11 5 CH_sgi_2527 2 2 0.000730727
Solanum lycopersicum SL4.0ch05 5 CH_sly_929 2 2 0.000880411
Schrenkiella parvula ch1-1 5 CH_spa_354 2 2 0.00078734
Solanum pennellii Spenn-ch05 5 CH_spe_701 2 2 0.000266874
Selenicereus undatus Scaffold_3410 5 CH_sun_370 2 2 0.000726639
Theobroma cacao Chromosome_2 5 CH_tca_675 2 2 0.000439432
Tarenaya hassleriana NW_010961290.1 5 CH_tha_290 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_239 3 4 0.000000343786
Utricularia gibba unitig_26 5 CH_ugi_304 2 2 0.000492287
Vigna mungo CM024074.1 5 CH_vmu_584 2 2 0.000646141
Zea mays 3 5 CH_zma_427 2 2 0.000306788
Arabidopsis lyrata scaffold_1 6 CH_aly_587 2 2 0.000396027
Avicennia marina ScioBoG_102831_HRSCAF_103044 6 CH_ama_188 2 2 0.000517331
Aquilegia oxysepala CHR03 6 CH_aox_406 2 2 0.000240597
Arabidopsis thaliana Chr1 6 CH_ath_509 2 2 0.000286492
Brassica napus A09 6 CH_bna_464 3 3 0.000000147807
Brassica oleracea C8 6 CH_bol_838 2 2 0.000686409
Brassica rapa A09 6 CH_bra_161 3 3 0.000000154824
Beta vulgaris Chr6_EL10_PGA_scaffold0 6 CH_bvu_24 6 6 8.75583e-20
Cannabis sativa NC_044370.1 6 CH_cansat_364 3 13 0.0000369569
Cannabis sativa NC_044379.1 6 CH_cansat_604 2 2 0.000984963
Coffea canephora chr11 6 CH_ccan_18 5 12 9.02793e-16
Citrus clementina scaffold_4 6 CH_ccl_508 2 2 0.0000820311
Carpinus fangiana Cfa03 6 CH_cfa_599 2 2 0.000757346
Cardamine hirsuta Chr1 6 CH_chi_687 2 2 0.000414723
Cucumis melo chr10 6 CH_cme_404 2 2 0.000400267
Corchorus olitorius AWUE01018132.1 6 CH_col_127 2 2 0.000292099
Carica papaya supercontig_128 6 CH_cpa_28 4 4 0.00000000000257786
Chenopodium quinoa C_Quinoa_Scaffold_1214 6 CH_cqu_14 10 10 1.66062e-31
Capsella rubella scaffold_1 6 CH_cru_576 2 2 0.000438693
Cucumis sativus L. chr3 6 CH_csa_252 4 24 0.00000387565
Daucus carota DCARv2_Chr9 6 CH_dca_667 2 2 0.000637775
Eucalyptus grandis Chr07 6 CH_egr_639 3 3 0.0000000205534
Erythranthe guttata scaffold_12 6 CH_egut_644 2 2 0.000436888
Fragaria vesca Fvb4 6 CH_fve_821 2 2 0.000883652
Gossypium hirsutum A12 6 CH_ghi_1329 2 2 0.000961256
Gossypium hirsutum D12 6 CH_ghi_1330 2 2 0.000961256
Gossypium raimondii Chr08 6 CH_gra_613 2 2 0.000536107
Helianthus annuus HanXRQChr08 6 CH_han_249 5 25 0.000000000111769
Lupinus albus Lalb_Chr17 6 CH_lal_749 2 2 0.000787236
Lotus japonicus chr2 6 CH_lja_459 2 2 0.000214523
Lonicera japonica GWHAAZE00000006 6 CH_lonja_709 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_316 3 3 0.0000000396314
Malus domestica Chr16 6 CH_mdo_1381 2 2 0.000796344
Manihot esculenta Chromosome05 6 CH_mes_616 2 2 0.000366379
Medicago truncatula chr5 6 CH_mtr_161 6 9 0.00000000000000110715
Oryza sativa ssp. japonica chr01 6 CH_osa_744 2 2 0.000792184
Petunia axillaris Peaxi162Scf00222 6 CH_pax_90 4 4 0.0000000000731412
Punica granatum NC_045132.1 6 CH_pgr_583 2 3 0.000675279
Prunus persica Pp01 6 CH_ppe_829 2 2 0.000745962
Pisum sativum chr2LG1 6 CH_psa_64 5 6 0.0000000000000186593
Papaver somniferum NW_020622713.1 6 CH_pso_304 4 9 0.000000000907468
Populus trichocarpa Chr08 6 CH_ptr_664 2 2 0.000346801
Salix brachista GWHAAZH00000008 6 CH_sbr_520 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000004 6 CH_sci_269 2 2 0.0000851426
Sechium edule LG08 6 CH_sed_312 3 8 0.0000704573
Sequoiadendron giganteum chr5 6 CH_sgi_2525 2 2 0.000730727
Sequoiadendron giganteum chr2 6 CH_sgi_2526 2 2 0.000730727
Sequoiadendron giganteum chr11 6 CH_sgi_2527 2 2 0.000730727
Solanum lycopersicum SL4.0ch05 6 CH_sly_929 2 2 0.000880411
Schrenkiella parvula ch1-1 6 CH_spa_354 2 2 0.00078734
Solanum pennellii Spenn-ch05 6 CH_spe_701 2 2 0.000266874
Selenicereus undatus Scaffold_3410 6 CH_sun_370 2 2 0.000726639
Theobroma cacao Chromosome_2 6 CH_tca_675 2 2 0.000439432
Tarenaya hassleriana NW_010961290.1 6 CH_tha_290 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_239 3 4 0.000000343786
Utricularia gibba unitig_26 6 CH_ugi_304 2 2 0.000492287
Vigna mungo CM024074.1 6 CH_vmu_584 2 2 0.000646141
Zea mays 3 6 CH_zma_427 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001