Functional clusters
Information
- Type InterPro
- Description E3 ubiquitin-protein ligase BIG BROTHER
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_127 | 4 | 5 | 0.000000000150964 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_237 | 3 | 6 | 0.00000024621 |
| Brassica carinata | ChrC03 | 5 | CH_bca_2046 | 2 | 2 | 0.000769551 |
| Brassica napus | A02 | 5 | CH_bna_1517 | 2 | 2 | 0.000835275 |
| Brassica napus | C02 | 5 | CH_bna_1518 | 2 | 2 | 0.000835275 |
| Brassica oleracea | C2 | 5 | CH_bol_788 | 2 | 2 | 0.000490292 |
| Brassica rapa | A02 | 5 | CH_bra_529 | 2 | 2 | 0.000429314 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_723 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_248 | 3 | 3 | 0.000000160382 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_167 | 3 | 3 | 0.0000000869853 |
| Hydrangea macrophylla | Hma1.2p1_0099F.1 | 5 | CH_hma_657 | 2 | 2 | 0.000666519 |
| Magnolia biondii | Chr12 | 5 | CH_mbi_1225 | 2 | 2 | 0.000728491 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1398 | 2 | 3 | 0.000739518 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_43 | 4 | 4 | 0.000000000021966 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_884 | 2 | 3 | 0.000800581 |
| Trochodendron aralioides | group7 | 5 | CH_tar_342 | 3 | 3 | 0.00000118949 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_127 | 4 | 5 | 0.000000000150964 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_237 | 3 | 6 | 0.00000024621 |
| Brassica carinata | ChrC03 | 6 | CH_bca_2046 | 2 | 2 | 0.000769551 |
| Brassica napus | A02 | 6 | CH_bna_1517 | 2 | 2 | 0.000835275 |
| Brassica napus | C02 | 6 | CH_bna_1518 | 2 | 2 | 0.000835275 |
| Brassica oleracea | C2 | 6 | CH_bol_788 | 2 | 2 | 0.000490292 |
| Brassica rapa | A02 | 6 | CH_bra_529 | 2 | 2 | 0.000429314 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_723 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_248 | 3 | 3 | 0.000000160382 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_167 | 3 | 3 | 0.0000000869853 |
| Hydrangea macrophylla | Hma1.2p1_0099F.1 | 6 | CH_hma_657 | 2 | 2 | 0.000666519 |
| Magnolia biondii | Chr12 | 6 | CH_mbi_1225 | 2 | 2 | 0.000728491 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1398 | 2 | 3 | 0.000739518 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_43 | 4 | 4 | 0.000000000021966 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_884 | 2 | 3 | 0.000800581 |
| Trochodendron aralioides | group7 | 6 | CH_tar_342 | 3 | 3 | 0.00000118949 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |