Functional clusters
Information
- Type InterPro
- Description The WD repeat Cdc20/Fizzy family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 5 | CH_aag_367 | 2 | 2 | 0.000802568 |
| Brassica carinata | ChrC02 | 5 | CH_bca_1610 | 3 | 8 | 0.000229394 |
| Brassica carinata | ChrB07 | 5 | CH_bca_216 | 5 | 9 | 0.0000000000548501 |
| Brassica napus | C04 | 5 | CH_bna_59 | 8 | 30 | 4.21369e-17 |
| Brassica oleracea | C4 | 5 | CH_bol_210 | 4 | 9 | 0.0000000313889 |
| Chara braunii | BFEA01000557 | 5 | CH_cbr_306 | 2 | 2 | 0.000431562 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_106 | 5 | 5 | 0.00000000000146709 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_598 | 4 | 9 | 0.000000005302 |
| Gossypium hirsutum | A11 | 5 | CH_ghi_396 | 4 | 7 | 0.0000000119571 |
| Lonicera japonica | GWHAAZE00000008 | 5 | CH_lonja_1169 | 2 | 2 | 0.000598874 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_355 | 3 | 7 | 0.00003481 |
| Olea europaea | chr19 | 5 | CH_oeu_175 | 4 | 32 | 0.00000057286 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_653 | 3 | 5 | 0.00000346344 |
| Sapria himalayana | scaffold79_1975033 | 5 | CH_shi_549 | 2 | 2 | 0.000571804 |
| Sapria himalayana | scaffold58_3239794 | 5 | CH_shi_550 | 2 | 2 | 0.000571804 |
| Selenicereus undatus | Scaffold_33677 | 5 | CH_sun_120 | 3 | 5 | 0.00000443386 |
| Trochodendron aralioides | group0 | 5 | CH_tar_69 | 6 | 11 | 0.000000000000150304 |
| Vanilla planifolia | CM028156.1 | 5 | CH_vpl_22 | 7 | 24 | 5.31291e-16 |
| Vitis vinifera | chr5 | 5 | CH_vvi_554 | 3 | 9 | 0.000120095 |
| Anthoceros agrestis | Sc2ySwM_368 | 6 | CH_aag_367 | 2 | 2 | 0.000802568 |
| Brassica carinata | ChrC02 | 6 | CH_bca_1610 | 3 | 8 | 0.000229394 |
| Brassica carinata | ChrB07 | 6 | CH_bca_216 | 5 | 9 | 0.0000000000548501 |
| Brassica napus | C04 | 6 | CH_bna_59 | 8 | 30 | 4.21369e-17 |
| Brassica oleracea | C4 | 6 | CH_bol_210 | 4 | 9 | 0.0000000313889 |
| Chara braunii | BFEA01000557 | 6 | CH_cbr_306 | 2 | 2 | 0.000431562 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_106 | 5 | 5 | 0.00000000000146709 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_598 | 4 | 9 | 0.000000005302 |
| Gossypium hirsutum | A11 | 6 | CH_ghi_396 | 4 | 7 | 0.0000000119571 |
| Lonicera japonica | GWHAAZE00000008 | 6 | CH_lonja_1169 | 2 | 2 | 0.000598874 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_355 | 3 | 7 | 0.00003481 |
| Olea europaea | chr19 | 6 | CH_oeu_175 | 4 | 32 | 0.00000057286 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_653 | 3 | 5 | 0.00000346344 |
| Sapria himalayana | scaffold79_1975033 | 6 | CH_shi_549 | 2 | 2 | 0.000571804 |
| Sapria himalayana | scaffold58_3239794 | 6 | CH_shi_550 | 2 | 2 | 0.000571804 |
| Selenicereus undatus | Scaffold_33677 | 6 | CH_sun_120 | 3 | 5 | 0.00000443386 |
| Trochodendron aralioides | group0 | 6 | CH_tar_69 | 6 | 11 | 0.000000000000150304 |
| Vanilla planifolia | CM028156.1 | 6 | CH_vpl_22 | 7 | 24 | 5.31291e-16 |
| Vitis vinifera | chr5 | 6 | CH_vvi_554 | 3 | 9 | 0.000120095 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |