Functional clusters
Information
- Type InterPro
- Description Squalene cyclase, C-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 5 | CH_aar_255 | 4 | 49 | 0.0000602033 |
| Actinidia chinensis | Lachesis_group25 | 5 | CH_ach_161 | 3 | 4 | 0.000000991367 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_94 | 7 | 58 | 0.0000000000124276 |
| Brassica rapa | A05 | 5 | CH_bra_499 | 3 | 18 | 0.000371402 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_895 | 3 | 5 | 0.0000359336 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_329 | 3 | 4 | 0.000017586 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_570 | 3 | 8 | 0.0000931353 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_111 | 6 | 8 | 0.000000000000015631 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_189 | 5 | 7 | 0.0000000000270154 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_476 | 3 | 3 | 0.00000558433 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 5 | CH_cqu_693 | 3 | 7 | 0.0000960693 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_264 | 3 | 4 | 0.00000689682 |
| Davidia involucrata | GWHABJS00000001 | 5 | CH_din_227 | 4 | 8 | 0.0000000262743 |
| Davidia involucrata | GWHABJS00000016 | 5 | CH_din_400 | 3 | 5 | 0.0000136509 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_470 | 3 | 7 | 0.0000174315 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_508 | 3 | 9 | 0.0000418225 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_297 | 4 | 11 | 0.0000000424565 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_565 | 3 | 3 | 0.00000195829 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_181 | 4 | 13 | 0.0000000212927 |
| Papaver somniferum | NC_039360.1 | 5 | CH_pso_1275 | 3 | 30 | 0.000881787 |
| Populus trichocarpa | Chr07 | 5 | CH_ptr_507 | 3 | 6 | 0.0000286442 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_366 | 3 | 4 | 0.0000117862 |
| Phaseolus vulgaris | Chr06 | 5 | CH_pvu_60 | 7 | 10 | 5.10074e-18 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_389 | 5 | 11 | 0.000000000704959 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_839 | 4 | 17 | 0.00000789953 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_426 | 3 | 7 | 0.0000002186 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_323 | 3 | 3 | 0.000000260834 |
| Salix brachista | GWHAAZH00000007 | 5 | CH_sbr_378 | 3 | 4 | 0.00000866988 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_303 | 3 | 3 | 0.000000103353 |
| Tarenaya hassleriana | NW_010964598.1 | 5 | CH_tha_58 | 4 | 4 | 0.000000000337384 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_532 | 3 | 10 | 0.000130331 |
| Vigna mungo | CM024077.1 | 5 | CH_vmu_229 | 3 | 4 | 0.00000210388 |
| Aethionema arabicum | LG-4 | 6 | CH_aar_255 | 4 | 49 | 0.0000602033 |
| Actinidia chinensis | Lachesis_group25 | 6 | CH_ach_161 | 3 | 4 | 0.000000991367 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_94 | 7 | 58 | 0.0000000000124276 |
| Brassica rapa | A05 | 6 | CH_bra_499 | 3 | 18 | 0.000371402 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_895 | 3 | 5 | 0.0000359336 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_329 | 3 | 4 | 0.000017586 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_570 | 3 | 8 | 0.0000931353 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_111 | 6 | 8 | 0.000000000000015631 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_189 | 5 | 7 | 0.0000000000270154 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_476 | 3 | 3 | 0.00000558433 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 6 | CH_cqu_693 | 3 | 7 | 0.0000960693 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_264 | 3 | 4 | 0.00000689682 |
| Davidia involucrata | GWHABJS00000001 | 6 | CH_din_227 | 4 | 8 | 0.0000000262743 |
| Davidia involucrata | GWHABJS00000016 | 6 | CH_din_400 | 3 | 5 | 0.0000136509 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_470 | 3 | 7 | 0.0000174315 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_508 | 3 | 9 | 0.0000418225 |
| Fragaria x ananassa | Fvb6-4 | 6 | CH_fan_164 | 6 | 38 | 0.000000000121272 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_297 | 4 | 11 | 0.0000000424565 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_565 | 3 | 3 | 0.00000195829 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_181 | 4 | 13 | 0.0000000212927 |
| Papaver somniferum | NC_039360.1 | 6 | CH_pso_1275 | 3 | 30 | 0.000881787 |
| Populus trichocarpa | Chr07 | 6 | CH_ptr_507 | 3 | 6 | 0.0000286442 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_366 | 3 | 4 | 0.0000117862 |
| Phaseolus vulgaris | Chr06 | 6 | CH_pvu_60 | 7 | 10 | 5.10074e-18 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_389 | 5 | 11 | 0.000000000704959 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_839 | 4 | 17 | 0.00000789953 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_426 | 3 | 7 | 0.0000002186 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_323 | 3 | 3 | 0.000000260834 |
| Salix brachista | GWHAAZH00000007 | 6 | CH_sbr_378 | 3 | 4 | 0.00000866988 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_303 | 3 | 3 | 0.000000103353 |
| Tarenaya hassleriana | NW_010964598.1 | 6 | CH_tha_58 | 4 | 4 | 0.000000000337384 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_532 | 3 | 10 | 0.000130331 |
| Vigna mungo | CM024077.1 | 6 | CH_vmu_229 | 3 | 4 | 0.00000210388 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |