Functional clusters
Information
- Type InterPro
- Description Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_321 | 3 | 4 | 0.00000219539 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_642 | 2 | 2 | 0.000802177 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1082 | 3 | 6 | 0.0000132782 |
| Camellia sinensis var. sinensis | Contig133 | 5 | CH_camsi_242 | 5 | 8 | 0.0000000000377538 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_737 | 3 | 3 | 0.0000041949 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 5 | CH_can_449 | 3 | 5 | 0.0000122783 |
| Coffea canephora | chr2 | 5 | CH_ccan_593 | 2 | 5 | 0.000357744 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_349 | 3 | 4 | 0.00000240755 |
| Carya illinoinensis | Chr14 | 5 | CH_cil_362 | 3 | 3 | 0.000000322727 |
| Corchorus olitorius | AWUE01023851.1 | 5 | CH_col_196 | 2 | 3 | 0.000876168 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1765 | 5 | CH_cqu_903 | 3 | 15 | 0.000437178 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_102 | 5 | 7 | 0.00000000000207904 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_329 | 6 | 10 | 0.0000000000000601762 |
| Eutrema salsugineum | scaffold_10 | 5 | CH_esa_267 | 3 | 5 | 0.0000104333 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_410 | 3 | 3 | 0.00000148885 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_1 | 23 | 36 | 1.1256e-60 |
| Helianthus annuus | HanXRQChr06 | 5 | CH_han_557 | 4 | 8 | 0.00000149184 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_508 | 6 | 55 | 0.000000651601 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_217 | 4 | 5 | 0.000000000170121 |
| Malus domestica | Chr02 | 5 | CH_mdo_22 | 12 | 55 | 1.23247e-25 |
| Manihot esculenta | Chromosome06 | 5 | CH_mes_145 | 5 | 8 | 0.00000000000147109 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_303 | 3 | 4 | 0.00000283722 |
| Prunus persica | Pp02 | 5 | CH_ppe_284 | 4 | 7 | 0.000000009148 |
| Populus trichocarpa | Chr18 | 5 | CH_ptr_398 | 3 | 3 | 0.00000143327 |
| Quercus lobata | 4 | 5 | CH_qlo_78 | 10 | 16 | 1.18453e-27 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_472 | 4 | 7 | 0.0000000121003 |
| Salix brachista | GWHAAZH00000018 | 5 | CH_sbr_307 | 3 | 3 | 0.00000131039 |
| Simmondsia chinensis | GWHAASQ00000003 | 5 | CH_sci_90 | 4 | 7 | 0.00000000816167 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_658 | 4 | 4 | 0.000000000114461 |
| Sapria himalayana | scaffold1_25991295 | 5 | CH_shi_179 | 3 | 5 | 0.000000490384 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_125 | 6 | 11 | 0.000000000000280206 |
| Schrenkiella parvula | ch4-6 | 5 | CH_spa_189 | 3 | 6 | 0.000015612 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_228 | 4 | 7 | 0.0000000168054 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_182 | 5 | 8 | 0.0000000000247979 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_657 | 3 | 7 | 0.000112363 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_753 | 3 | 9 | 0.000269501 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_135 | 4 | 4 | 0.00000000438162 |
| Vigna mungo | CM024077.1 | 5 | CH_vmu_269 | 3 | 6 | 0.0000150213 |
| Vitis vinifera | chr13 | 5 | CH_vvi_113 | 6 | 11 | 0.000000000000132294 |
| Zea mays | 2 | 5 | CH_zma_317 | 3 | 11 | 0.0000362014 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_321 | 3 | 4 | 0.00000219539 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_642 | 2 | 2 | 0.000802177 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1082 | 3 | 6 | 0.0000132782 |
| Camellia sinensis var. sinensis | Contig133 | 6 | CH_camsi_242 | 5 | 8 | 0.0000000000377538 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_737 | 3 | 3 | 0.0000041949 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 6 | CH_can_449 | 3 | 5 | 0.0000122783 |
| Coffea canephora | chr2 | 6 | CH_ccan_593 | 2 | 5 | 0.000357744 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_349 | 3 | 4 | 0.00000240755 |
| Carya illinoinensis | Chr14 | 6 | CH_cil_362 | 3 | 3 | 0.000000322727 |
| Corchorus olitorius | AWUE01023851.1 | 6 | CH_col_196 | 2 | 3 | 0.000876168 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1765 | 6 | CH_cqu_903 | 3 | 15 | 0.000437178 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_102 | 5 | 7 | 0.00000000000207904 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_329 | 6 | 10 | 0.0000000000000601762 |
| Eutrema salsugineum | scaffold_10 | 6 | CH_esa_267 | 3 | 5 | 0.0000104333 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_571 | 3 | 3 | 0.00000507417 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_410 | 3 | 3 | 0.00000148885 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_1 | 23 | 36 | 1.1256e-60 |
| Helianthus annuus | HanXRQChr06 | 6 | CH_han_557 | 4 | 8 | 0.00000149184 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_508 | 6 | 55 | 0.000000651601 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_217 | 4 | 5 | 0.000000000170121 |
| Malus domestica | Chr02 | 6 | CH_mdo_22 | 12 | 55 | 1.23247e-25 |
| Manihot esculenta | Chromosome06 | 6 | CH_mes_145 | 5 | 8 | 0.00000000000147109 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_303 | 3 | 4 | 0.00000283722 |
| Prunus persica | Pp02 | 6 | CH_ppe_284 | 4 | 7 | 0.000000009148 |
| Populus trichocarpa | Chr18 | 6 | CH_ptr_398 | 3 | 3 | 0.00000143327 |
| Quercus lobata | 4 | 6 | CH_qlo_78 | 10 | 16 | 1.18453e-27 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_472 | 4 | 7 | 0.0000000121003 |
| Salix brachista | GWHAAZH00000018 | 6 | CH_sbr_307 | 3 | 3 | 0.00000131039 |
| Simmondsia chinensis | GWHAASQ00000003 | 6 | CH_sci_90 | 4 | 7 | 0.00000000816167 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_658 | 4 | 4 | 0.000000000114461 |
| Sapria himalayana | scaffold1_25991295 | 6 | CH_shi_179 | 3 | 5 | 0.000000490384 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_125 | 6 | 11 | 0.000000000000280206 |
| Schrenkiella parvula | ch4-6 | 6 | CH_spa_189 | 3 | 6 | 0.000015612 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_228 | 4 | 7 | 0.0000000168054 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_182 | 5 | 8 | 0.0000000000247979 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_657 | 3 | 7 | 0.000112363 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_753 | 3 | 9 | 0.000269501 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_135 | 4 | 4 | 0.00000000438162 |
| Vigna mungo | CM024077.1 | 6 | CH_vmu_269 | 3 | 6 | 0.0000150213 |
| Vitis vinifera | chr13 | 6 | CH_vvi_113 | 6 | 11 | 0.000000000000132294 |
| Zea mays | 2 | 6 | CH_zma_317 | 3 | 11 | 0.0000362014 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |