Functional clusters
Information
- Type InterPro
- Description Ninja family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_1226 | 2 | 2 | 0.000275128 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2646 | 5 | CH_cqu_1076 | 2 | 2 | 0.000995025 |
| Quercus lobata | 3 | 5 | CH_qlo_920 | 4 | 29 | 0.000000684598 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_666 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1211 | 3 | 4 | 0.000000498328 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_135 | 9 | 78 | 0.00000000000179143 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_42 | 9 | 10 | 1.04734e-22 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_58 | 8 | 9 | 1.23509e-19 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_913 | 3 | 6 | 0.000617144 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_75 | 8 | 68 | 0.0000000000000243393 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_392 | 3 | 3 | 0.000000649971 |
| Tripterygium wilfordii | NC_052246.1 | 5 | CH_twi_277 | 3 | 4 | 0.00000678661 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_1226 | 2 | 2 | 0.000275128 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2646 | 6 | CH_cqu_1076 | 2 | 2 | 0.000995025 |
| Quercus lobata | 3 | 6 | CH_qlo_920 | 4 | 29 | 0.000000684598 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_666 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1211 | 3 | 4 | 0.000000498328 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_135 | 9 | 78 | 0.00000000000179143 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_42 | 9 | 10 | 1.04734e-22 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_58 | 8 | 9 | 1.23509e-19 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_913 | 3 | 6 | 0.000617144 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_75 | 8 | 68 | 0.0000000000000243393 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_392 | 3 | 3 | 0.000000649971 |
| Tripterygium wilfordii | NC_052246.1 | 6 | CH_twi_277 | 3 | 4 | 0.00000678661 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |