Functional clusters

Information

  • Type InterPro
  • Description High mobility group protein HMGB, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 5 CH_aly_737 2 2 0.000990066
Arabidopsis thaliana Chr1 5 CH_ath_520 2 2 0.000286492
Cicer arietinum L. Ca_LG8_v3 5 CH_car_413 2 2 0.000778301
Cardamine hirsuta Chr1 5 CH_chi_792 2 2 0.000691204
Daucus carota DCARv2_Chr5 5 CH_dca_699 2 2 0.000637775
Erythranthe guttata scaffold_23 5 CH_egut_729 2 2 0.000728147
Eutrema salsugineum scaffold_5 5 CH_esa_527 2 2 0.000761499
Helianthus annuus HanXRQChr12 5 CH_han_1190 2 2 0.0008115
Malus domestica Chr02 5 CH_mdo_1247 2 2 0.000379212
Petunia axillaris Peaxi162Scf00122 5 CH_pax_646 2 2 0.000422134
Punica granatum NC_045127.1 5 CH_pgr_565 2 2 0.000450214
Prunus persica Pp07 5 CH_ppe_776 2 2 0.000447577
Papaver somniferum NC_039363.1 5 CH_pso_462 3 3 0.0000000913641
Striga asiatica scaffold54 5 CH_sas_74 3 5 0.00000205277
Schrenkiella parvula ch1-1 5 CH_spa_374 2 2 0.00078734
Selenicereus undatus Scaffold_33673 5 CH_sun_203 2 2 0.0000726639
Vitis vinifera chr13 5 CH_vvi_784 2 2 0.00076063
Arabidopsis lyrata scaffold_1 6 CH_aly_737 2 2 0.000990066
Arabidopsis thaliana Chr1 6 CH_ath_520 2 2 0.000286492
Cicer arietinum L. Ca_LG8_v3 6 CH_car_413 2 2 0.000778301
Cardamine hirsuta Chr1 6 CH_chi_792 2 2 0.000691204
Daucus carota DCARv2_Chr5 6 CH_dca_699 2 2 0.000637775
Erythranthe guttata scaffold_23 6 CH_egut_729 2 2 0.000728147
Eutrema salsugineum scaffold_5 6 CH_esa_527 2 2 0.000761499
Helianthus annuus HanXRQChr12 6 CH_han_1190 2 2 0.0008115
Malus domestica Chr02 6 CH_mdo_1247 2 2 0.000379212
Petunia axillaris Peaxi162Scf00122 6 CH_pax_646 2 2 0.000422134
Punica granatum NC_045127.1 6 CH_pgr_565 2 2 0.000450214
Prunus persica Pp07 6 CH_ppe_776 2 2 0.000447577
Papaver somniferum NC_039363.1 6 CH_pso_462 3 3 0.0000000913641
Striga asiatica scaffold54 6 CH_sas_74 3 5 0.00000205277
Schrenkiella parvula ch1-1 6 CH_spa_374 2 2 0.00078734
Selenicereus undatus Scaffold_33673 6 CH_sun_203 2 2 0.0000726639
Vitis vinifera chr13 6 CH_vvi_784 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001