Functional clusters
Information
- Type InterPro
- Description FHY3/FAR1 family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 5 | CH_acertr_650 | 4 | 5 | 0.0000735341 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_497 | 4 | 8 | 0.000653792 |
| Carica papaya | supercontig_60 | 5 | CH_cpa_219 | 3 | 3 | 0.0000038773 |
| Durio zibethinus | NW_019167926.1 | 5 | CH_dzi_399 | 3 | 4 | 0.0000638987 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_973 | 3 | 3 | 0.000279788 |
| Malus domestica | Chr17 | 5 | CH_mdo_752 | 3 | 3 | 0.000014118 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1001 | 3 | 3 | 0.0000740916 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_422 | 3 | 6 | 0.000113909 |
| Nicotiana tabacum | Nitab4.5_0000092 | 5 | CH_nta_290 | 3 | 3 | 0.000353998 |
| Nicotiana tabacum | Nitab4.5_0001488 | 5 | CH_nta_291 | 3 | 3 | 0.000353998 |
| Nicotiana tabacum | Nitab4.5_0001727 | 5 | CH_nta_292 | 3 | 3 | 0.000353998 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_388 | 3 | 4 | 0.0000327201 |
| Prunus persica | Pp03 | 5 | CH_ppe_645 | 3 | 3 | 0.00013535 |
| Papaver somniferum | NW_020649860.1 | 5 | CH_pso_1055 | 4 | 7 | 0.000258143 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_506 | 3 | 3 | 0.0000273423 |
| Quercus lobata | 5 | 5 | CH_qlo_1342 | 3 | 3 | 0.000088365 |
| Quercus lobata | 4 | 5 | CH_qlo_1625 | 3 | 4 | 0.000353116 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_1262 | 3 | 5 | 0.000253826 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_921 | 3 | 3 | 0.0000254124 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_986 | 4 | 6 | 0.000657111 |
| Tripterygium wilfordii | NC_052243.1 | 5 | CH_twi_326 | 4 | 4 | 0.0000357084 |
| Acer truncatum | chr8 | 6 | CH_acertr_650 | 4 | 5 | 0.0000735341 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_497 | 4 | 8 | 0.000653792 |
| Carica papaya | supercontig_60 | 6 | CH_cpa_219 | 3 | 3 | 0.0000038773 |
| Durio zibethinus | NW_019167926.1 | 6 | CH_dzi_399 | 3 | 4 | 0.0000638987 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_973 | 3 | 3 | 0.000279788 |
| Malus domestica | Chr17 | 6 | CH_mdo_752 | 3 | 3 | 0.000014118 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1001 | 3 | 3 | 0.0000740916 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_422 | 3 | 6 | 0.000113909 |
| Nicotiana tabacum | Nitab4.5_0000092 | 6 | CH_nta_290 | 3 | 3 | 0.000353998 |
| Nicotiana tabacum | Nitab4.5_0001488 | 6 | CH_nta_291 | 3 | 3 | 0.000353998 |
| Nicotiana tabacum | Nitab4.5_0001727 | 6 | CH_nta_292 | 3 | 3 | 0.000353998 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_388 | 3 | 4 | 0.0000327201 |
| Prunus persica | Pp03 | 6 | CH_ppe_645 | 3 | 3 | 0.00013535 |
| Papaver somniferum | NW_020649860.1 | 6 | CH_pso_1055 | 4 | 7 | 0.000258143 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_506 | 3 | 3 | 0.0000273423 |
| Quercus lobata | 5 | 6 | CH_qlo_1342 | 3 | 3 | 0.000088365 |
| Quercus lobata | 4 | 6 | CH_qlo_1625 | 3 | 4 | 0.000353116 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_1262 | 3 | 5 | 0.000253826 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_921 | 3 | 3 | 0.0000254124 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_986 | 4 | 6 | 0.000657111 |
| Tripterygium wilfordii | NC_052243.1 | 6 | CH_twi_326 | 4 | 4 | 0.0000357084 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |