Functional clusters
Information
- Type InterPro
- Description Citrate carrier CitT-related
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-1 | 5 | CH_aar_323 | 2 | 2 | 0.000273698 |
Actinidia chinensis | Lachesis_group16 | 5 | CH_ach_578 | 2 | 2 | 0.000814819 |
Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_513 | 2 | 2 | 0.000198013 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 5 | CH_amhyb_297 | 2 | 2 | 0.000252525 |
Arabidopsis thaliana | Chr5 | 5 | CH_ath_416 | 2 | 3 | 0.0000859476 |
Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_1194 | 2 | 2 | 0.000275128 |
Cardamine hirsuta | Chr8 | 5 | CH_chi_586 | 2 | 2 | 0.000207361 |
Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 5 | CH_cqu_912 | 2 | 2 | 0.000473821 |
Chenopodium quinoa | C_Quinoa_Scaffold_1040 | 5 | CH_cqu_913 | 2 | 2 | 0.000473821 |
Capsella rubella | scaffold_8 | 5 | CH_cru_520 | 2 | 2 | 0.000219346 |
Eutrema salsugineum | scaffold_6 | 5 | CH_esa_401 | 2 | 2 | 0.00022845 |
Helianthus annuus | HanXRQChr15 | 5 | CH_han_125 | 7 | 31 | 0.00000000000000785807 |
Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_1137 | 2 | 2 | 0.000598874 |
Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_812 | 2 | 2 | 0.000514007 |
Nelumbo nucifera | chr2 | 5 | CH_nnu_581 | 3 | 28 | 0.000636672 |
Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_628 | 2 | 2 | 0.000316874 |
Physcomitrium patens | Chr18 | 5 | CH_ppa_355 | 2 | 2 | 0.000612726 |
Rhododendron simsii | chr10 | 5 | CH_rsi_867 | 2 | 2 | 0.000387184 |
Simmondsia chinensis | GWHAASQ00000008 | 5 | CH_sci_370 | 2 | 2 | 0.000255428 |
Sequoiadendron giganteum | chr9 | 5 | CH_sgi_2004 | 2 | 2 | 0.000146145 |
Sapria himalayana | scaffold8_16897533 | 5 | CH_shi_416 | 2 | 2 | 0.000171541 |
Schrenkiella parvula | ch2-4 | 5 | CH_spa_278 | 2 | 2 | 0.000236202 |
Selenicereus undatus | Scaffold_33676 | 5 | CH_sun_371 | 2 | 2 | 0.000726639 |
Tarenaya hassleriana | NW_010960188.1 | 5 | CH_tha_328 | 2 | 2 | 0.00069847 |
Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_773 | 2 | 2 | 0.000929238 |
Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_774 | 2 | 2 | 0.000929238 |
Aethionema arabicum | LG-1 | 6 | CH_aar_323 | 2 | 2 | 0.000273698 |
Actinidia chinensis | Lachesis_group16 | 6 | CH_ach_578 | 2 | 2 | 0.000814819 |
Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_513 | 2 | 2 | 0.000198013 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 6 | CH_amhyb_297 | 2 | 2 | 0.000252525 |
Arabidopsis thaliana | Chr5 | 6 | CH_ath_416 | 2 | 3 | 0.0000859476 |
Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_1194 | 2 | 2 | 0.000275128 |
Cardamine hirsuta | Chr8 | 6 | CH_chi_586 | 2 | 2 | 0.000207361 |
Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 6 | CH_cqu_912 | 2 | 2 | 0.000473821 |
Chenopodium quinoa | C_Quinoa_Scaffold_1040 | 6 | CH_cqu_913 | 2 | 2 | 0.000473821 |
Capsella rubella | scaffold_8 | 6 | CH_cru_520 | 2 | 2 | 0.000219346 |
Eutrema salsugineum | scaffold_6 | 6 | CH_esa_401 | 2 | 2 | 0.00022845 |
Helianthus annuus | HanXRQChr15 | 6 | CH_han_125 | 7 | 31 | 0.00000000000000785807 |
Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_1137 | 2 | 2 | 0.000598874 |
Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_812 | 2 | 2 | 0.000514007 |
Nelumbo nucifera | chr2 | 6 | CH_nnu_581 | 3 | 28 | 0.000636672 |
Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_628 | 2 | 2 | 0.000316874 |
Physcomitrium patens | Chr18 | 6 | CH_ppa_355 | 2 | 2 | 0.000612726 |
Rhododendron simsii | chr10 | 6 | CH_rsi_867 | 2 | 2 | 0.000387184 |
Simmondsia chinensis | GWHAASQ00000008 | 6 | CH_sci_370 | 2 | 2 | 0.000255428 |
Sequoiadendron giganteum | chr9 | 6 | CH_sgi_2004 | 2 | 2 | 0.000146145 |
Sapria himalayana | scaffold8_16897533 | 6 | CH_shi_416 | 2 | 2 | 0.000171541 |
Schrenkiella parvula | ch2-4 | 6 | CH_spa_278 | 2 | 2 | 0.000236202 |
Selenicereus undatus | Scaffold_33676 | 6 | CH_sun_371 | 2 | 2 | 0.000726639 |
Tarenaya hassleriana | NW_010960188.1 | 6 | CH_tha_328 | 2 | 2 | 0.00069847 |
Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_773 | 2 | 2 | 0.000929238 |
Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_774 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |