Functional clusters

Information

  • Type InterPro
  • Description Citrate carrier CitT-related

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 5 CH_aar_323 2 2 0.000273698
Actinidia chinensis Lachesis_group16 5 CH_ach_578 2 2 0.000814819
Arabidopsis lyrata scaffold_8 5 CH_aly_513 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 5 CH_amhyb_297 2 2 0.000252525
Arabidopsis thaliana Chr5 5 CH_ath_416 2 3 0.0000859476
Camellia sinensis var. sinensis Chr1 5 CH_camsi_1194 2 2 0.000275128
Cardamine hirsuta Chr8 5 CH_chi_586 2 2 0.000207361
Chenopodium quinoa C_Quinoa_Scaffold_1257 5 CH_cqu_912 2 2 0.000473821
Chenopodium quinoa C_Quinoa_Scaffold_1040 5 CH_cqu_913 2 2 0.000473821
Capsella rubella scaffold_8 5 CH_cru_520 2 2 0.000219346
Eutrema salsugineum scaffold_6 5 CH_esa_401 2 2 0.00022845
Helianthus annuus HanXRQChr15 5 CH_han_125 7 31 0.00000000000000785807
Lonicera japonica GWHAAZE00000002 5 CH_lonja_1137 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_812 2 2 0.000514007
Nelumbo nucifera chr2 5 CH_nnu_581 3 28 0.000636672
Oryza sativa ssp. japonica chr09 5 CH_osa_628 2 2 0.000316874
Physcomitrium patens Chr18 5 CH_ppa_355 2 2 0.000612726
Rhododendron simsii chr10 5 CH_rsi_867 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000008 5 CH_sci_370 2 2 0.000255428
Sequoiadendron giganteum chr9 5 CH_sgi_2004 2 2 0.000146145
Sapria himalayana scaffold8_16897533 5 CH_shi_416 2 2 0.000171541
Schrenkiella parvula ch2-4 5 CH_spa_278 2 2 0.000236202
Selenicereus undatus Scaffold_33676 5 CH_sun_371 2 2 0.000726639
Tarenaya hassleriana NW_010960188.1 5 CH_tha_328 2 2 0.00069847
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_773 2 2 0.000929238
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_774 2 2 0.000929238
Aethionema arabicum LG-1 6 CH_aar_323 2 2 0.000273698
Actinidia chinensis Lachesis_group16 6 CH_ach_578 2 2 0.000814819
Arabidopsis lyrata scaffold_8 6 CH_aly_513 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 6 CH_amhyb_297 2 2 0.000252525
Arabidopsis thaliana Chr5 6 CH_ath_416 2 3 0.0000859476
Camellia sinensis var. sinensis Chr1 6 CH_camsi_1194 2 2 0.000275128
Cardamine hirsuta Chr8 6 CH_chi_586 2 2 0.000207361
Chenopodium quinoa C_Quinoa_Scaffold_1257 6 CH_cqu_912 2 2 0.000473821
Chenopodium quinoa C_Quinoa_Scaffold_1040 6 CH_cqu_913 2 2 0.000473821
Capsella rubella scaffold_8 6 CH_cru_520 2 2 0.000219346
Eutrema salsugineum scaffold_6 6 CH_esa_401 2 2 0.00022845
Helianthus annuus HanXRQChr15 6 CH_han_125 7 31 0.00000000000000785807
Lonicera japonica GWHAAZE00000002 6 CH_lonja_1137 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_812 2 2 0.000514007
Nelumbo nucifera chr2 6 CH_nnu_581 3 28 0.000636672
Oryza sativa ssp. japonica chr09 6 CH_osa_628 2 2 0.000316874
Physcomitrium patens Chr18 6 CH_ppa_355 2 2 0.000612726
Rhododendron simsii chr10 6 CH_rsi_867 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000008 6 CH_sci_370 2 2 0.000255428
Sequoiadendron giganteum chr9 6 CH_sgi_2004 2 2 0.000146145
Sapria himalayana scaffold8_16897533 6 CH_shi_416 2 2 0.000171541
Schrenkiella parvula ch2-4 6 CH_spa_278 2 2 0.000236202
Selenicereus undatus Scaffold_33676 6 CH_sun_371 2 2 0.000726639
Tarenaya hassleriana NW_010960188.1 6 CH_tha_328 2 2 0.00069847
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_773 2 2 0.000929238
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_774 2 2 0.000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001