Functional clusters

Information

  • Type InterPro
  • Description Ureide permease, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 5 CH_aar_419 2 3 0.000821031
Actinidia chinensis Lachesis_group12 5 CH_ach_574 2 6 0.00081473
Arabidopsis lyrata scaffold_5 5 CH_aly_118 4 9 0.000000000108688
Avicennia marina ScioBoG_102834_HRSCAF_103055 5 CH_ama_15 4 5 0.0000000000480767
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_1229 2 2 0.000628705
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_1230 2 2 0.000628705
Arabidopsis thaliana Chr2 5 CH_ath_176 4 35 0.0000000184544
Brassica carinata ChrC05 5 CH_bca_638 3 4 0.000000328987
Brassica napus A09 5 CH_bna_1498 2 2 0.000835275
Brassica rapa A09 5 CH_bra_454 2 2 0.000257588
Cannabis sativa NC_044379.1 5 CH_cansat_438 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold59 5 CH_can_671 2 2 0.000247831
Cicer arietinum L. Ca_LG2_v3 5 CH_car_198 2 2 0.0000778301
Cardamine hirsuta Chr5 5 CH_chi_168 4 10 0.00000000103995
Citrullus lanatus CG_Chr00 5 CH_cla_330 2 2 0.000532269
Chenopodium quinoa C_Quinoa_Scaffold_1000 5 CH_cqu_317 3 3 0.000000117869
Capsella rubella scaffold_5 5 CH_cru_158 4 10 0.00000000123088
Cucumis sativus L. chr5 5 CH_csa_160 3 3 0.0000000418111
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_179 3 3 0.00000000302034
Eucalyptus grandis Chr07 5 CH_egr_1317 2 3 0.000526721
Fragaria vesca Fvb4 5 CH_fve_234 3 3 0.00000000520576
Gossypium hirsutum D13 5 CH_ghi_1320 2 4 0.000961196
Glycine max Gm02 5 CH_gma_624 2 2 0.000113867
Gossypium raimondii Chr13 5 CH_gra_552 2 4 0.000321647
Helianthus annuus HanXRQChr08 5 CH_han_790 2 2 0.0000386429
Hydrangea macrophylla Hma1.2p1_0566F.1 5 CH_hma_504 2 3 0.000333241
Lotus japonicus chr2 5 CH_lja_122 3 3 0.00000000767031
Lonicera japonica GWHAAZE00000006 5 CH_lonja_895 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_255 3 3 0.00000000396314
Magnolia biondii Chr19 5 CH_mbi_380 3 6 0.0000000707565
Manihot esculenta Chromosome01 5 CH_mes_491 2 2 0.0000610631
Medicago truncatula chr5 5 CH_mtr_895 3 46 0.0000384045
Oryza sativa ssp. japonica chr12 5 CH_osa_227 3 5 0.0000000418359
Pisum sativum chr2LG1 5 CH_psa_127 4 15 0.000000000581116
Populus trichocarpa Chr08 5 CH_ptr_531 2 2 0.0000578001
Phaseolus vulgaris Chr03 5 CH_pvu_526 2 2 0.000220418
Quercus lobata 3 5 CH_qlo_325 5 12 0.0000000000000422033
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_454 3 4 0.00000000953543
Rhododendron simsii chr12 5 CH_rsi_662 2 2 0.0000645307
Striga asiatica scaffold16 5 CH_sas_229 2 2 0.000625371
Sechium edule LG07 5 CH_sed_159 3 3 0.000000152696
Schrenkiella parvula ch2-4 5 CH_spa_347 2 3 0.000708559
Solanum pennellii Spenn-ch05 5 CH_spe_877 2 3 0.000800581
Selenicereus undatus Scaffold_3410 5 CH_sun_260 2 2 0.000217992
Theobroma cacao Chromosome_2 5 CH_tca_735 2 5 0.000732306
Tarenaya hassleriana NW_010961290.1 5 CH_tha_293 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG2 5 CH_tpr_251 3 9 0.000000721855
Tripterygium wilfordii NC_052233.1 5 CH_twi_390 2 2 0.000167252
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_148 3 3 0.0000000129529
Vigna mungo CM024074.1 5 CH_vmu_410 2 3 0.000193836
Aethionema arabicum LG-2 6 CH_aar_419 2 3 0.000821031
Actinidia chinensis Lachesis_group12 6 CH_ach_574 2 6 0.00081473
Arabidopsis lyrata scaffold_5 6 CH_aly_118 4 9 0.000000000108688
Avicennia marina ScioBoG_102834_HRSCAF_103055 6 CH_ama_15 4 5 0.0000000000480767
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_1229 2 2 0.000628705
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_1230 2 2 0.000628705
Arabidopsis thaliana Chr2 6 CH_ath_176 4 35 0.0000000184544
Brassica carinata ChrC05 6 CH_bca_638 3 4 0.000000328987
Brassica napus A09 6 CH_bna_1498 2 2 0.000835275
Brassica rapa A09 6 CH_bra_454 2 2 0.000257588
Cannabis sativa NC_044379.1 6 CH_cansat_438 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold59 6 CH_can_671 2 2 0.000247831
Cicer arietinum L. Ca_LG2_v3 6 CH_car_198 2 2 0.0000778301
Cardamine hirsuta Chr5 6 CH_chi_168 4 10 0.00000000103995
Citrullus lanatus CG_Chr00 6 CH_cla_330 2 2 0.000532269
Cucumis melo chr10 6 CH_cme_354 2 2 0.000200133
Chenopodium quinoa C_Quinoa_Scaffold_1000 6 CH_cqu_317 3 3 0.000000117869
Capsella rubella scaffold_5 6 CH_cru_158 4 10 0.00000000123088
Cucumis sativus L. chr5 6 CH_csa_160 3 3 0.0000000418111
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_179 3 3 0.00000000302034
Eucalyptus grandis Chr07 6 CH_egr_1317 2 3 0.000526721
Fragaria vesca Fvb4 6 CH_fve_234 3 3 0.00000000520576
Gossypium hirsutum D13 6 CH_ghi_1320 2 4 0.000961196
Glycine max Gm02 6 CH_gma_624 2 2 0.000113867
Gossypium raimondii Chr13 6 CH_gra_552 2 4 0.000321647
Helianthus annuus HanXRQChr08 6 CH_han_790 2 2 0.0000386429
Hydrangea macrophylla Hma1.2p1_0566F.1 6 CH_hma_504 2 3 0.000333241
Lotus japonicus chr2 6 CH_lja_122 3 3 0.00000000767031
Lonicera japonica GWHAAZE00000006 6 CH_lonja_895 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_255 3 3 0.00000000396314
Magnolia biondii Chr19 6 CH_mbi_380 3 6 0.0000000707565
Manihot esculenta Chromosome01 6 CH_mes_491 2 2 0.0000610631
Medicago truncatula chr5 6 CH_mtr_895 3 46 0.0000384045
Oryza sativa ssp. japonica chr12 6 CH_osa_227 3 5 0.0000000418359
Pisum sativum chr2LG1 6 CH_psa_127 4 15 0.000000000581116
Populus trichocarpa Chr08 6 CH_ptr_531 2 2 0.0000578001
Phaseolus vulgaris Chr03 6 CH_pvu_526 2 2 0.000220418
Quercus lobata 3 6 CH_qlo_325 5 12 0.0000000000000422033
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_454 3 4 0.00000000953543
Rhododendron simsii chr12 6 CH_rsi_662 2 2 0.0000645307
Striga asiatica scaffold16 6 CH_sas_229 2 2 0.000625371
Sechium edule LG07 6 CH_sed_159 3 3 0.000000152696
Schrenkiella parvula ch2-4 6 CH_spa_347 2 3 0.000708559
Solanum pennellii Spenn-ch05 6 CH_spe_877 2 3 0.000800581
Selenicereus undatus Scaffold_3410 6 CH_sun_260 2 2 0.000217992
Theobroma cacao Chromosome_2 6 CH_tca_735 2 5 0.000732306
Tarenaya hassleriana NW_010961290.1 6 CH_tha_293 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG2 6 CH_tpr_251 3 9 0.000000721855
Tripterygium wilfordii NC_052233.1 6 CH_twi_390 2 2 0.000167252
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_148 3 3 0.0000000129529
Vigna mungo CM024074.1 6 CH_vmu_410 2 3 0.000193836

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001