Functional clusters
Information
- Type InterPro
- Description Cationic amino acid transporter, C-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 5 | CH_acertr_308 | 4 | 15 | 0.000000180443 |
| Camellia sinensis var. sinensis | Contig1039 | 5 | CH_camsi_350 | 4 | 7 | 0.00000000333955 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_336 | 3 | 8 | 0.0000202675 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_249 | 4 | 12 | 0.000000318633 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_404 | 3 | 3 | 0.000000950893 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_136 | 4 | 5 | 0.00000000278182 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_1004 | 3 | 5 | 0.0000287566 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_792 | 2 | 2 | 0.000589102 |
| Lupinus albus | Lalb_Chr12 | 5 | CH_lal_340 | 3 | 4 | 0.00000925243 |
| Lotus japonicus | chr1 | 5 | CH_lja_268 | 3 | 3 | 0.00000168747 |
| Malus domestica | Chr05 | 5 | CH_mdo_648 | 3 | 4 | 0.00000314013 |
| Medicago truncatula | chr6 | 5 | CH_mtr_214 | 5 | 5 | 0.000000000000132268 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_287 | 3 | 5 | 0.00000417519 |
| Prunus persica | Pp04 | 5 | CH_ppe_850 | 2 | 2 | 0.000745962 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_541 | 4 | 17 | 0.0000000569266 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_727 | 3 | 12 | 0.000115251 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_2213 | 3 | 13 | 0.000290578 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_674 | 4 | 4 | 0.000000000248 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_379 | 3 | 3 | 0.000000472706 |
| Acer truncatum | chr10 | 6 | CH_acertr_308 | 4 | 15 | 0.000000180443 |
| Camellia sinensis var. sinensis | Contig1039 | 6 | CH_camsi_350 | 4 | 7 | 0.00000000333955 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_336 | 3 | 8 | 0.0000202675 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_249 | 4 | 12 | 0.000000318633 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_404 | 3 | 3 | 0.000000950893 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_136 | 4 | 5 | 0.00000000278182 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_1004 | 3 | 5 | 0.0000287566 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_792 | 2 | 2 | 0.000589102 |
| Lupinus albus | Lalb_Chr12 | 6 | CH_lal_340 | 3 | 4 | 0.00000925243 |
| Lotus japonicus | chr1 | 6 | CH_lja_268 | 3 | 3 | 0.00000168747 |
| Malus domestica | Chr05 | 6 | CH_mdo_648 | 3 | 4 | 0.00000314013 |
| Medicago truncatula | chr6 | 6 | CH_mtr_214 | 5 | 5 | 0.000000000000132268 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_287 | 3 | 5 | 0.00000417519 |
| Prunus persica | Pp04 | 6 | CH_ppe_850 | 2 | 2 | 0.000745962 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_541 | 4 | 17 | 0.0000000569266 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_727 | 3 | 12 | 0.000115251 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_2213 | 3 | 13 | 0.000290578 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_674 | 4 | 4 | 0.000000000248 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_379 | 3 | 3 | 0.000000472706 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |