Functional clusters
Information
- Type InterPro
- Description Caspase-like domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_340 | 5 | CH_aag_67 | 6 | 14 | 0.00000000353234 |
| Aethionema arabicum | LG-4 | 5 | CH_aar_395 | 2 | 2 | 0.000547395 |
| Avicennia marina | ScioBoG_19743_HRSCAF_19834 | 5 | CH_ama_61 | 3 | 3 | 0.000000624499 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 5 | CH_can_384 | 3 | 5 | 0.00000204688 |
| Coffea canephora | chr2 | 5 | CH_ccan_27 | 4 | 7 | 0.0000000000000405557 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_319 | 3 | 5 | 0.000000716546 |
| Carica papaya | supercontig_42 | 5 | CH_cpa_670 | 2 | 2 | 0.000950661 |
| Davidia involucrata | GWHABJS00000005 | 5 | CH_din_754 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019167849.1 | 5 | CH_dzi_168 | 4 | 13 | 0.0000000268839 |
| Erythranthe guttata | scaffold_11 | 5 | CH_egut_180 | 5 | 18 | 0.000000000454202 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_340 | 3 | 3 | 0.00000095439 |
| Gossypium hirsutum | A06 | 5 | CH_ghi_615 | 3 | 3 | 0.00000216462 |
| Gossypium hirsutum | D06 | 5 | CH_ghi_71 | 9 | 16 | 5.47342e-24 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_92 | 6 | 10 | 0.00000000000000358894 |
| Hydrangea macrophylla | Hma1.2p1_0522F.1 | 5 | CH_hma_438 | 2 | 2 | 0.000111086 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_263 | 4 | 5 | 0.0000000000483275 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_361 | 3 | 4 | 0.000000158516 |
| Malus domestica | Chr10 | 5 | CH_mdo_558 | 3 | 4 | 0.000000724697 |
| Malus domestica | Chr05 | 5 | CH_mdo_658 | 3 | 6 | 0.00000362273 |
| Manihot esculenta | Chromosome07 | 5 | CH_mes_148 | 5 | 8 | 0.00000000000269679 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_758 | 2 | 4 | 0.000938861 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_389 | 3 | 3 | 0.0000000624652 |
| Salix brachista | GWHAAZH00000017 | 5 | CH_sbr_132 | 6 | 51 | 0.0000000000336667 |
| Simmondsia chinensis | GWHAASQ00000014 | 5 | CH_sci_463 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_2635 | 2 | 3 | 0.000876823 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_335 | 3 | 3 | 0.000000289388 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_299 | 3 | 3 | 0.000000166188 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_377 | 3 | 4 | 0.00000112629 |
| Tripterygium wilfordii | NC_052249.1 | 5 | CH_twi_535 | 2 | 2 | 0.00083626 |
| Zea mays | 9 | 5 | CH_zma_447 | 2 | 2 | 0.000306788 |
| Anthoceros agrestis | Sc2ySwM_340 | 6 | CH_aag_67 | 6 | 14 | 0.00000000353234 |
| Aethionema arabicum | LG-4 | 6 | CH_aar_395 | 2 | 2 | 0.000547395 |
| Avicennia marina | ScioBoG_19743_HRSCAF_19834 | 6 | CH_ama_61 | 3 | 3 | 0.000000624499 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 6 | CH_can_384 | 3 | 5 | 0.00000204688 |
| Coffea canephora | chr2 | 6 | CH_ccan_27 | 4 | 7 | 0.0000000000000405557 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_319 | 3 | 5 | 0.000000716546 |
| Carica papaya | supercontig_42 | 6 | CH_cpa_670 | 2 | 2 | 0.000950661 |
| Davidia involucrata | GWHABJS00000005 | 6 | CH_din_754 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019167849.1 | 6 | CH_dzi_168 | 4 | 13 | 0.0000000268839 |
| Erythranthe guttata | scaffold_11 | 6 | CH_egut_180 | 5 | 18 | 0.000000000454202 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_340 | 3 | 3 | 0.00000095439 |
| Gossypium hirsutum | A06 | 6 | CH_ghi_615 | 3 | 3 | 0.00000216462 |
| Gossypium hirsutum | D06 | 6 | CH_ghi_71 | 9 | 16 | 5.47342e-24 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_92 | 6 | 10 | 0.00000000000000358894 |
| Hydrangea macrophylla | Hma1.2p1_0522F.1 | 6 | CH_hma_438 | 2 | 2 | 0.000111086 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_263 | 4 | 5 | 0.0000000000483275 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_361 | 3 | 4 | 0.000000158516 |
| Malus domestica | Chr10 | 6 | CH_mdo_558 | 3 | 4 | 0.000000724697 |
| Malus domestica | Chr05 | 6 | CH_mdo_658 | 3 | 6 | 0.00000362273 |
| Manihot esculenta | Chromosome07 | 6 | CH_mes_148 | 5 | 8 | 0.00000000000269679 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_758 | 2 | 4 | 0.000938861 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_389 | 3 | 3 | 0.0000000624652 |
| Salix brachista | GWHAAZH00000017 | 6 | CH_sbr_132 | 6 | 51 | 0.0000000000336667 |
| Simmondsia chinensis | GWHAASQ00000014 | 6 | CH_sci_463 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_2635 | 2 | 3 | 0.000876823 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_335 | 3 | 3 | 0.000000289388 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_299 | 3 | 3 | 0.000000166188 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_377 | 3 | 4 | 0.00000112629 |
| Tripterygium wilfordii | NC_052249.1 | 6 | CH_twi_535 | 2 | 2 | 0.00083626 |
| Zea mays | 9 | 6 | CH_zma_447 | 2 | 2 | 0.000306788 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |