Functional clusters
Information
- Type InterPro
- Description Cysteine-rich transmembrane CYSTM domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 5 | CH_acertr_775 | 2 | 2 | 0.000211491 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_303 | 3 | 3 | 0.00000143772 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_376 | 3 | 5 | 0.0000143698 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_350 | 3 | 16 | 0.0000241132 |
| Brassica oleracea | C9 | 5 | CH_bol_318 | 3 | 3 | 0.000000729184 |
| Corylus avellana | 5 | 5 | CH_cav_83 | 5 | 8 | 0.000000000000304737 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_311 | 5 | 5 | 0.0000000000000221808 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_100 | 5 | 7 | 0.000000000000238989 |
| Glycine max | Gm15 | 5 | CH_gma_445 | 3 | 3 | 0.00000332793 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_701 | 2 | 2 | 0.000154202 |
| Medicago truncatula | chr2 | 5 | CH_mtr_753 | 3 | 4 | 0.00000289631 |
| Prunus persica | Pp06 | 5 | CH_ppe_72 | 7 | 7 | 8.73663e-20 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_497 | 3 | 4 | 0.000000170537 |
| Quercus lobata | 4 | 5 | CH_qlo_460 | 4 | 4 | 0.0000000000144511 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_219 | 5 | 7 | 0.000000000000100236 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_809 | 2 | 2 | 0.000193592 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_909 | 3 | 4 | 0.000000014239 |
| Schrenkiella parvula | ch4-6 | 5 | CH_spa_373 | 2 | 2 | 0.00078734 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_237 | 3 | 3 | 0.000000300841 |
| Vitis vinifera | chr3 | 5 | CH_vvi_115 | 5 | 6 | 0.000000000000189803 |
| Acer truncatum | chr8 | 6 | CH_acertr_775 | 2 | 2 | 0.000211491 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_303 | 3 | 3 | 0.00000143772 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_376 | 3 | 5 | 0.0000143698 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_350 | 3 | 16 | 0.0000241132 |
| Brassica oleracea | C9 | 6 | CH_bol_318 | 3 | 3 | 0.000000729184 |
| Corylus avellana | 5 | 6 | CH_cav_83 | 5 | 8 | 0.000000000000304737 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_311 | 5 | 5 | 0.0000000000000221808 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_180 | 4 | 6 | 0.000000000285336 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_100 | 5 | 7 | 0.000000000000238989 |
| Glycine max | Gm15 | 6 | CH_gma_445 | 3 | 3 | 0.00000332793 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_701 | 2 | 2 | 0.000154202 |
| Medicago truncatula | chr2 | 6 | CH_mtr_753 | 3 | 4 | 0.00000289631 |
| Prunus persica | Pp06 | 6 | CH_ppe_72 | 7 | 7 | 8.73663e-20 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_497 | 3 | 4 | 0.000000170537 |
| Quercus lobata | 4 | 6 | CH_qlo_460 | 4 | 4 | 0.0000000000144511 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_219 | 5 | 7 | 0.000000000000100236 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_809 | 2 | 2 | 0.000193592 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_909 | 3 | 4 | 0.000000014239 |
| Schrenkiella parvula | ch4-6 | 6 | CH_spa_373 | 2 | 2 | 0.00078734 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_237 | 3 | 3 | 0.000000300841 |
| Vitis vinifera | chr3 | 6 | CH_vvi_115 | 5 | 6 | 0.000000000000189803 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |