Functional clusters
Information
- Type InterPro
- Description Periplasmic binding protein-like I
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Corylus avellana | 2 | 5 | CH_cav_26 | 13 | 30 | 1.30364e-25 |
| Corchorus olitorius | AWUE01016540.1 | 5 | CH_col_21 | 5 | 5 | 0.000000000000327878 |
| Cucumis sativus L. | chr6 | 5 | CH_csa_363 | 3 | 4 | 0.000152647 |
| Davidia involucrata | GWHABJS00000016 | 5 | CH_din_100 | 6 | 8 | 0.000000000000543551 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_102 | 6 | 15 | 0.000000000018482 |
| Gossypium hirsutum | D07 | 5 | CH_ghi_368 | 4 | 4 | 0.00000000336435 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_2 | 30 | 58 | 1.34668e-68 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_515 | 4 | 5 | 0.00000087127 |
| Prunus persica | Pp01 | 5 | CH_ppe_33 | 11 | 13 | 5.12316e-26 |
| Quercus lobata | 5 | 5 | CH_qlo_1357 | 5 | 60 | 0.000105631 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1188 | 3 | 3 | 0.000181358 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_1189 | 3 | 3 | 0.000181358 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_173 | 11 | 59 | 0.00000000000000271652 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_42 | 15 | 36 | 4.85542e-29 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_119 | 15 | 40 | 2.35555e-26 |
| Trochodendron aralioides | group3 | 5 | CH_tar_557 | 3 | 3 | 0.0000620696 |
| Trochodendron aralioides | group0 | 5 | CH_tar_75 | 6 | 7 | 0.000000000000644002 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_66 | 7 | 9 | 1.07201e-16 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_85 | 5 | 5 | 0.00000000000867231 |
| Corylus avellana | 2 | 6 | CH_cav_26 | 13 | 30 | 1.30364e-25 |
| Corchorus olitorius | AWUE01016540.1 | 6 | CH_col_21 | 5 | 5 | 0.000000000000327878 |
| Cucumis sativus L. | chr6 | 6 | CH_csa_363 | 3 | 4 | 0.000152647 |
| Davidia involucrata | GWHABJS00000016 | 6 | CH_din_100 | 6 | 8 | 0.000000000000543551 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_102 | 6 | 15 | 0.000000000018482 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_1000 | 3 | 4 | 0.000363053 |
| Gossypium hirsutum | D07 | 6 | CH_ghi_368 | 4 | 4 | 0.00000000336435 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_2 | 30 | 58 | 1.34668e-68 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_515 | 4 | 5 | 0.00000087127 |
| Prunus persica | Pp01 | 6 | CH_ppe_33 | 11 | 13 | 5.12316e-26 |
| Quercus lobata | 5 | 6 | CH_qlo_1357 | 5 | 60 | 0.000105631 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1188 | 3 | 3 | 0.000181358 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_1189 | 3 | 3 | 0.000181358 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_173 | 11 | 59 | 0.00000000000000271652 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_42 | 15 | 36 | 4.85542e-29 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_119 | 15 | 40 | 2.35555e-26 |
| Trochodendron aralioides | group3 | 6 | CH_tar_557 | 3 | 3 | 0.0000620696 |
| Trochodendron aralioides | group0 | 6 | CH_tar_75 | 6 | 7 | 0.000000000000644002 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_66 | 7 | 9 | 1.07201e-16 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_85 | 5 | 5 | 0.00000000000867231 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |