Functional clusters

Information

  • Type InterPro
  • Description Periplasmic binding protein-like I

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 2 5 CH_cav_26 13 30 1.30364e-25
Corchorus olitorius AWUE01016540.1 5 CH_col_21 5 5 0.000000000000327878
Cucumis sativus L. chr6 5 CH_csa_363 3 4 0.000152647
Davidia involucrata GWHABJS00000016 5 CH_din_100 6 8 0.000000000000543551
Erigeron canadensis Conyza_canadensis_scaffold:4 5 CH_eca_102 6 15 0.000000000018482
Gossypium hirsutum D07 5 CH_ghi_368 4 4 0.00000000336435
Lonicera japonica GWHAAZE00000005 5 CH_lonja_2 30 58 1.34668e-68
Lonicera japonica GWHAAZE00000004 5 CH_lonja_515 4 5 0.00000087127
Prunus persica Pp01 5 CH_ppe_33 11 13 5.12316e-26
Quercus lobata 5 5 CH_qlo_1357 5 60 0.000105631
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_1188 3 3 0.000181358
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_1189 3 3 0.000181358
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_173 11 59 0.00000000000000271652
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_42 15 36 4.85542e-29
Sequoiadendron giganteum chr4 5 CH_sgi_119 15 40 2.35555e-26
Trochodendron aralioides group3 5 CH_tar_557 3 3 0.0000620696
Trochodendron aralioides group0 5 CH_tar_75 6 7 0.000000000000644002
Theobroma cacao Chromosome_9 5 CH_tca_66 7 9 1.07201e-16
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_85 5 5 0.00000000000867231
Corylus avellana 2 6 CH_cav_26 13 30 1.30364e-25
Corchorus olitorius AWUE01016540.1 6 CH_col_21 5 5 0.000000000000327878
Cucumis sativus L. chr6 6 CH_csa_363 3 4 0.000152647
Davidia involucrata GWHABJS00000016 6 CH_din_100 6 8 0.000000000000543551
Erigeron canadensis Conyza_canadensis_scaffold:4 6 CH_eca_102 6 15 0.000000000018482
Fragaria x ananassa Fvb3-2 6 CH_fan_1000 3 4 0.000363053
Gossypium hirsutum D07 6 CH_ghi_368 4 4 0.00000000336435
Lonicera japonica GWHAAZE00000005 6 CH_lonja_2 30 58 1.34668e-68
Lonicera japonica GWHAAZE00000004 6 CH_lonja_515 4 5 0.00000087127
Prunus persica Pp01 6 CH_ppe_33 11 13 5.12316e-26
Quercus lobata 5 6 CH_qlo_1357 5 60 0.000105631
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_1188 3 3 0.000181358
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_1189 3 3 0.000181358
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_173 11 59 0.00000000000000271652
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_42 15 36 4.85542e-29
Sequoiadendron giganteum chr4 6 CH_sgi_119 15 40 2.35555e-26
Trochodendron aralioides group3 6 CH_tar_557 3 3 0.0000620696
Trochodendron aralioides group0 6 CH_tar_75 6 7 0.000000000000644002
Theobroma cacao Chromosome_9 6 CH_tca_66 7 9 1.07201e-16
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_85 5 5 0.00000000000867231

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001