Functional clusters
Information
- Type InterPro
- Description Sieve element occlusion, C-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_185 | 7 | 18 | 0.0000000000000096707 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_194 | 7 | 20 | 0.0000000000000235395 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_478 | 2 | 2 | 0.00049675 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_41 | 6 | 6 | 1.37522e-16 |
| Corylus avellana | 9 | 5 | CH_cav_183 | 4 | 6 | 0.00000000668997 |
| Coffea canephora | chr11 | 5 | CH_ccan_342 | 2 | 2 | 0.0000255534 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_118 | 5 | 6 | 0.0000000000172102 |
| Carya illinoinensis | Chr11 | 5 | CH_cil_485 | 3 | 3 | 0.0000065698 |
| Carya illinoinensis | Chr04 | 5 | CH_cil_486 | 3 | 3 | 0.0000065698 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3216 | 5 | CH_cqu_439 | 3 | 3 | 0.00000153229 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_615 | 2 | 2 | 0.000382665 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_53 | 6 | 21 | 0.0000000000000465856 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_923 | 3 | 3 | 0.00000585771 |
| Gossypium hirsutum | A03 | 5 | CH_ghi_208 | 6 | 15 | 0.000000000000724366 |
| Gossypium raimondii | Chr03 | 5 | CH_gra_159 | 5 | 12 | 0.000000000147115 |
| Helianthus annuus | HanXRQChr07 | 5 | CH_han_498 | 3 | 3 | 0.000000369592 |
| Medicago truncatula | chr1 | 5 | CH_mtr_89 | 8 | 23 | 1.50955e-20 |
| Nelumbo nucifera | chr8 | 5 | CH_nnu_221 | 4 | 22 | 0.000000308377 |
| Papaver somniferum | NW_020643262.1 | 5 | CH_pso_392 | 3 | 3 | 0.0000000152274 |
| Quercus lobata | 3 | 5 | CH_qlo_584 | 6 | 23 | 0.00000000133747 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_436 | 4 | 7 | 0.00000000329164 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_310 | 4 | 6 | 0.00000000398917 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_71 | 6 | 9 | 0.00000000000000173461 |
| Tarenaya hassleriana | NW_010966372.1 | 5 | CH_tha_259 | 2 | 2 | 0.000209541 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_185 | 7 | 18 | 0.0000000000000096707 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_194 | 7 | 20 | 0.0000000000000235395 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_478 | 2 | 2 | 0.00049675 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_41 | 6 | 6 | 1.37522e-16 |
| Corylus avellana | 9 | 6 | CH_cav_183 | 4 | 6 | 0.00000000668997 |
| Coffea canephora | chr11 | 6 | CH_ccan_342 | 2 | 2 | 0.0000255534 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_118 | 5 | 6 | 0.0000000000172102 |
| Carya illinoinensis | Chr11 | 6 | CH_cil_485 | 3 | 3 | 0.0000065698 |
| Carya illinoinensis | Chr04 | 6 | CH_cil_486 | 3 | 3 | 0.0000065698 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3216 | 6 | CH_cqu_439 | 3 | 3 | 0.00000153229 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_615 | 2 | 2 | 0.000382665 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_53 | 6 | 21 | 0.0000000000000465856 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_923 | 3 | 3 | 0.00000585771 |
| Fragaria x ananassa | Fvb4-4 | 6 | CH_fan_117 | 5 | 7 | 0.00000000000181399 |
| Fragaria x ananassa | Fvb4-2 | 6 | CH_fan_140 | 5 | 10 | 0.0000000000217556 |
| Gossypium hirsutum | A03 | 6 | CH_ghi_208 | 6 | 15 | 0.000000000000724366 |
| Gossypium raimondii | Chr03 | 6 | CH_gra_159 | 5 | 12 | 0.000000000147115 |
| Helianthus annuus | HanXRQChr07 | 6 | CH_han_498 | 3 | 3 | 0.000000369592 |
| Medicago truncatula | chr1 | 6 | CH_mtr_89 | 8 | 23 | 1.50955e-20 |
| Nelumbo nucifera | chr8 | 6 | CH_nnu_221 | 4 | 22 | 0.000000308377 |
| Papaver somniferum | NW_020643262.1 | 6 | CH_pso_392 | 3 | 3 | 0.0000000152274 |
| Quercus lobata | 3 | 6 | CH_qlo_584 | 6 | 23 | 0.00000000133747 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_436 | 4 | 7 | 0.00000000329164 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_310 | 4 | 6 | 0.00000000398917 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_71 | 6 | 9 | 0.00000000000000173461 |
| Tarenaya hassleriana | NW_010966372.1 | 6 | CH_tha_259 | 2 | 2 | 0.000209541 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |