Functional clusters

Information

  • Type InterPro
  • Description Sieve element occlusion, N-terminal

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 5 CH_aar_352 2 2 0.000273698
Acer truncatum chr11 5 CH_acertr_239 3 3 0.00000002982
Arabidopsis lyrata scaffold_3 5 CH_aly_541 2 2 0.000198013
Aquilegia oxysepala CHR05 5 CH_aox_42 5 9 0.000000000000234549
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_786 4 17 0.0000125871
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_964 3 5 0.000104383
Arabidopsis thaliana Chr3 5 CH_ath_429 2 2 0.0000859476
Brassica carinata ChrC05 5 CH_bca_541 4 41 0.00000010373
Brassica napus C09 5 CH_bna_1486 2 3 0.000835246
Brassica rapa Brapa_scaffold_76 5 CH_bra_465 2 2 0.000257588
Camellia sinensis var. sinensis Chr1 5 CH_camsi_123 6 11 0.00000000000000632425
Camellia sinensis var. sinensis Chr10 5 CH_camsi_654 3 3 0.00000114808
Cannabis sativa NC_044376.1 5 CH_cansat_48 7 16 8.2442e-16
Capsicum annuum PGAv.1.6.scaffold43 5 CH_can_708 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 5 CH_car_35 4 5 0.000000000495007
Coffea canephora chr4 5 CH_ccan_559 2 4 0.000255531
Carpinus fangiana Cfa03 5 CH_cfa_117 5 6 0.0000000000172102
Cardamine hirsuta Chr3 5 CH_chi_625 2 2 0.000207361
Carya illinoinensis Chr01 5 CH_cil_29 10 12 4.08611e-27
Citrullus lanatus CG_Chr06 5 CH_cla_7 7 7 4.60892e-21
Carica papaya supercontig_33 5 CH_cpa_586 2 2 0.000570396
Capsella rubella scaffold_3 5 CH_cru_539 2 2 0.000219346
Cucumis sativus L. chr2 5 CH_csa_37 7 11 1.05517e-18
Davidia involucrata GWHABJS00000014 5 CH_din_274 3 3 0.000000315165
Eucalyptus grandis Chr09 5 CH_egr_278 6 7 0.00000000000000419203
Eutrema salsugineum scaffold_13 5 CH_esa_416 2 2 0.00022845
Fragaria vesca Fvb4 5 CH_fve_185 4 4 0.000000000303624
Fragaria vesca Fvb4 5 CH_fve_319 4 11 0.000000100043
Gossypium hirsutum D03 5 CH_ghi_300 5 12 0.000000000357904
Gossypium hirsutum D04 5 CH_ghi_649 3 3 0.00000390786
Glycine max Gm20 5 CH_gma_289 4 6 0.0000000261311
Gossypium raimondii Chr12 5 CH_gra_311 3 3 0.0000015693
Lotus japonicus chr5 5 CH_lja_57 5 7 0.00000000000190214
Malus domestica Chr16 5 CH_mdo_664 3 4 0.00000392511
Manihot esculenta Chromosome17 5 CH_mes_317 3 3 0.000000313221
Petunia axillaris Peaxi162Scf00128 5 CH_pax_645 2 2 0.000422134
Punica granatum NC_045128.1 5 CH_pgr_160 4 6 0.00000000239481
Prunus persica Pp01 5 CH_ppe_431 3 3 0.0000023873
Pisum sativum chr6LG2 5 CH_psa_101 4 4 0.0000000000536569
Papaver somniferum NC_039364.1 5 CH_pso_976 2 2 0.000135176
Populus trichocarpa Chr01 5 CH_ptr_114 5 5 0.0000000000000663097
Populus trichocarpa Chr10 5 CH_ptr_193 4 4 0.000000000286781
Quercus lobata CM012294 5 CH_qlo_525 5 7 0.000000000189947
Quercus lobata CM012294 5 CH_qlo_938 4 8 0.000000907288
Rhododendron simsii chr08 5 CH_rsi_565 3 5 0.0000103021
Rhododendron simsii chr10 5 CH_rsi_617 4 43 0.0000325625
Salvia bowleyana GWHASIU00000002 5 CH_sbo_311 3 3 0.000000173889
Salvia bowleyana GWHASIU00000004 5 CH_sbo_312 3 3 0.000000173889
Salix brachista GWHAAZH00000010 5 CH_sbr_306 3 3 0.00000131039
Sechium edule LG09 5 CH_sed_19 8 10 8.58198e-22
Solanum lycopersicum SL4.0ch05 5 CH_sly_302 3 3 0.000000103353
Solanum lycopersicum SL4.0ch03 5 CH_sly_960 2 2 0.000880411
Schrenkiella parvula ch3-1 5 CH_spa_293 2 2 0.000236202
Solanum pennellii Spenn-ch05 5 CH_spe_307 3 4 0.000000237394
Solanum pennellii Spenn-ch03 5 CH_spe_859 2 2 0.000667186
Solanum tuberosum ST4.03ch05 5 CH_stu_292 3 3 0.0000000157569
Trochodendron aralioides group8 5 CH_tar_132 4 6 0.000000000340784
Tarenaya hassleriana NW_010967396.1 5 CH_tha_349 2 2 0.00069847
Tripterygium wilfordii NC_052237.1 5 CH_twi_189 3 3 0.000000261091
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_807 2 2 0.000929238
Vigna mungo CM024071.1 5 CH_vmu_41 6 12 0.000000000000117031
Vitis vinifera chr1 5 CH_vvi_356 3 3 0.00000104144
Vitis vinifera chr14 5 CH_vvi_78 6 7 8.42284e-17
Aethionema arabicum LG-5 6 CH_aar_352 2 2 0.000273698
Acer truncatum chr11 6 CH_acertr_239 3 3 0.00000002982
Arabidopsis lyrata scaffold_3 6 CH_aly_541 2 2 0.000198013
Aquilegia oxysepala CHR05 6 CH_aox_42 5 9 0.000000000000234549
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_786 4 17 0.0000125871
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_964 3 5 0.000104383
Arabidopsis thaliana Chr3 6 CH_ath_429 2 2 0.0000859476
Brassica carinata ChrC05 6 CH_bca_541 4 41 0.00000010373
Brassica napus C09 6 CH_bna_1486 2 3 0.000835246
Brassica rapa Brapa_scaffold_76 6 CH_bra_465 2 2 0.000257588
Camellia sinensis var. sinensis Chr1 6 CH_camsi_123 6 11 0.00000000000000632425
Camellia sinensis var. sinensis Chr10 6 CH_camsi_654 3 3 0.00000114808
Cannabis sativa NC_044376.1 6 CH_cansat_48 7 16 8.2442e-16
Capsicum annuum PGAv.1.6.scaffold43 6 CH_can_708 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 6 CH_car_35 4 5 0.000000000495007
Coffea canephora chr4 6 CH_ccan_559 2 4 0.000255531
Carpinus fangiana Cfa03 6 CH_cfa_117 5 6 0.0000000000172102
Cardamine hirsuta Chr3 6 CH_chi_625 2 2 0.000207361
Carya illinoinensis Chr01 6 CH_cil_29 10 12 4.08611e-27
Citrullus lanatus CG_Chr06 6 CH_cla_7 7 7 4.60892e-21
Cucumis melo chr05 6 CH_cme_33 7 12 6.59632e-19
Carica papaya supercontig_33 6 CH_cpa_586 2 2 0.000570396
Capsella rubella scaffold_3 6 CH_cru_539 2 2 0.000219346
Cucumis sativus L. chr2 6 CH_csa_37 7 11 1.05517e-18
Davidia involucrata GWHABJS00000014 6 CH_din_274 3 3 0.000000315165
Eucalyptus grandis Chr09 6 CH_egr_278 6 7 0.00000000000000419203
Eutrema salsugineum scaffold_13 6 CH_esa_416 2 2 0.00022845
Fragaria x ananassa Fvb4-2 6 CH_fan_1092 3 14 0.000545753
Fragaria x ananassa Fvb4-1 6 CH_fan_187 4 4 0.000000000333565
Fragaria vesca Fvb4 6 CH_fve_185 4 4 0.000000000303624
Fragaria vesca Fvb4 6 CH_fve_319 4 11 0.000000100043
Gossypium hirsutum D03 6 CH_ghi_300 5 12 0.000000000357904
Gossypium hirsutum D04 6 CH_ghi_649 3 3 0.00000390786
Glycine max Gm20 6 CH_gma_289 4 6 0.0000000261311
Gossypium raimondii Chr12 6 CH_gra_311 3 3 0.0000015693
Lotus japonicus chr5 6 CH_lja_57 5 7 0.00000000000190214
Malus domestica Chr16 6 CH_mdo_664 3 4 0.00000392511
Manihot esculenta Chromosome17 6 CH_mes_317 3 3 0.000000313221
Petunia axillaris Peaxi162Scf00128 6 CH_pax_645 2 2 0.000422134
Punica granatum NC_045128.1 6 CH_pgr_160 4 6 0.00000000239481
Prunus persica Pp01 6 CH_ppe_431 3 3 0.0000023873
Pisum sativum chr6LG2 6 CH_psa_101 4 4 0.0000000000536569
Papaver somniferum NC_039364.1 6 CH_pso_976 2 2 0.000135176
Populus trichocarpa Chr01 6 CH_ptr_114 5 5 0.0000000000000663097
Populus trichocarpa Chr10 6 CH_ptr_193 4 4 0.000000000286781
Quercus lobata CM012294 6 CH_qlo_525 5 7 0.000000000189947
Quercus lobata CM012294 6 CH_qlo_938 4 8 0.000000907288
Rhododendron simsii chr08 6 CH_rsi_565 3 5 0.0000103021
Rhododendron simsii chr10 6 CH_rsi_617 4 43 0.0000325625
Salvia bowleyana GWHASIU00000002 6 CH_sbo_311 3 3 0.000000173889
Salvia bowleyana GWHASIU00000004 6 CH_sbo_312 3 3 0.000000173889
Salix brachista GWHAAZH00000010 6 CH_sbr_306 3 3 0.00000131039
Sechium edule LG09 6 CH_sed_19 8 10 8.58198e-22
Solanum lycopersicum SL4.0ch05 6 CH_sly_302 3 3 0.000000103353
Solanum lycopersicum SL4.0ch03 6 CH_sly_960 2 2 0.000880411
Schrenkiella parvula ch3-1 6 CH_spa_293 2 2 0.000236202
Solanum pennellii Spenn-ch05 6 CH_spe_307 3 4 0.000000237394
Solanum pennellii Spenn-ch03 6 CH_spe_859 2 2 0.000667186
Solanum tuberosum ST4.03ch05 6 CH_stu_292 3 3 0.0000000157569
Trochodendron aralioides group8 6 CH_tar_132 4 6 0.000000000340784
Tarenaya hassleriana NW_010967396.1 6 CH_tha_349 2 2 0.00069847
Tripterygium wilfordii NC_052237.1 6 CH_twi_189 3 3 0.000000261091
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_807 2 2 0.000929238
Vigna mungo CM024071.1 6 CH_vmu_41 6 12 0.000000000000117031
Vitis vinifera chr1 6 CH_vvi_356 3 3 0.00000104144
Vitis vinifera chr14 6 CH_vvi_78 6 7 8.42284e-17

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001