Functional clusters
Information
- Type InterPro
- Description Flotillin family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_614 | 2 | 2 | 0.000396027 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 5 | CH_arhy_298 | 4 | 6 | 0.0000000000422609 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_462 | 3 | 3 | 0.0000000470566 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_428 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 5 | CH_atr_116 | 4 | 5 | 0.000000000263198 |
| Brassica carinata | ChrC03 | 5 | CH_bca_238 | 4 | 6 | 0.000000000145039 |
| Brassica oleracea | C2 | 5 | CH_bol_915 | 2 | 3 | 0.000980536 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_1547 | 2 | 2 | 0.000962949 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_648 | 3 | 5 | 0.00000110372 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_407 | 2 | 2 | 0.0000656642 |
| Capsicum annuum | PGAv.1.6.scaffold407 | 5 | CH_can_855 | 2 | 2 | 0.000826105 |
| Chara braunii | BFEA01000029 | 5 | CH_cbr_349 | 2 | 5 | 0.000719192 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_547 | 2 | 2 | 0.0000820311 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_720 | 2 | 2 | 0.000414723 |
| Citrullus lanatus | CG_Chr08 | 5 | CH_cla_225 | 2 | 2 | 0.0000887115 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 5 | CH_cqu_431 | 3 | 3 | 0.00000122584 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_601 | 2 | 2 | 0.000438693 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_346 | 2 | 2 | 0.0000834759 |
| Daucus carota | DCARv2_Chr6 | 5 | CH_dca_694 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000019 | 5 | CH_din_753 | 2 | 2 | 0.000500125 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_726 | 2 | 3 | 0.000403835 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_592 | 3 | 3 | 0.00000000513834 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_666 | 2 | 2 | 0.000436888 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_338 | 3 | 4 | 0.000000208215 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_95 | 5 | 5 | 1.00355e-16 |
| Lonicera japonica | GWHAAZE00000008 | 5 | CH_lonja_322 | 4 | 8 | 0.00000000157818 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_88 | 6 | 7 | 4.52536e-16 |
| Malus domestica | Chr16 | 5 | CH_mdo_1320 | 2 | 2 | 0.000568817 |
| Malus domestica | Chr15 | 5 | CH_mdo_421 | 3 | 3 | 0.0000000431413 |
| Marchantia polymorpha | scaffold_85 | 5 | CH_mpo_153 | 2 | 2 | 0.000110442 |
| Medicago truncatula | chr3 | 5 | CH_mtr_205 | 5 | 6 | 0.0000000000000592439 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_249 | 3 | 6 | 0.0000000836696 |
| Prunus persica | Pp01 | 5 | CH_ppe_280 | 3 | 3 | 0.00000000834721 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_149 | 3 | 3 | 0.00000000408165 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_1035 | 2 | 2 | 0.000225294 |
| Quercus lobata | 5 | 5 | CH_qlo_1722 | 2 | 2 | 0.000516289 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_609 | 3 | 3 | 0.000000200248 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_692 | 3 | 4 | 0.000000800904 |
| Rhododendron simsii | chr08 | 5 | CH_rsi_486 | 3 | 5 | 0.00000124904 |
| Simmondsia chinensis | GWHAASQ00000023 | 5 | CH_sci_306 | 2 | 2 | 0.0000851426 |
| Sechium edule | LG03 | 5 | CH_sed_466 | 2 | 2 | 0.000428052 |
| Trochodendron aralioides | group10 | 5 | CH_tar_163 | 3 | 3 | 0.00000000540676 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_161 | 3 | 3 | 0.00000000859546 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_184 | 3 | 3 | 0.0000000518115 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_614 | 2 | 2 | 0.000396027 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 6 | CH_arhy_298 | 4 | 6 | 0.0000000000422609 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_462 | 3 | 3 | 0.0000000470566 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_428 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 6 | CH_atr_116 | 4 | 5 | 0.000000000263198 |
| Brassica carinata | ChrC03 | 6 | CH_bca_238 | 4 | 6 | 0.000000000145039 |
| Brassica oleracea | C2 | 6 | CH_bol_915 | 2 | 3 | 0.000980536 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_1547 | 2 | 2 | 0.000962949 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_648 | 3 | 5 | 0.00000110372 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_407 | 2 | 2 | 0.0000656642 |
| Capsicum annuum | PGAv.1.6.scaffold407 | 6 | CH_can_855 | 2 | 2 | 0.000826105 |
| Chara braunii | BFEA01000029 | 6 | CH_cbr_349 | 2 | 5 | 0.000719192 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_547 | 2 | 2 | 0.0000820311 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_720 | 2 | 2 | 0.000414723 |
| Citrullus lanatus | CG_Chr08 | 6 | CH_cla_225 | 2 | 2 | 0.0000887115 |
| Cucumis melo | chr03 | 6 | CH_cme_312 | 2 | 2 | 0.0000667111 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 6 | CH_cqu_431 | 3 | 3 | 0.00000122584 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_601 | 2 | 2 | 0.000438693 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_346 | 2 | 2 | 0.0000834759 |
| Daucus carota | DCARv2_Chr6 | 6 | CH_dca_694 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000019 | 6 | CH_din_753 | 2 | 2 | 0.000500125 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_726 | 2 | 3 | 0.000403835 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_592 | 3 | 3 | 0.00000000513834 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_666 | 2 | 2 | 0.000436888 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_1180 | 2 | 2 | 0.00066613 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_338 | 3 | 4 | 0.000000208215 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_95 | 5 | 5 | 1.00355e-16 |
| Lonicera japonica | GWHAAZE00000008 | 6 | CH_lonja_322 | 4 | 8 | 0.00000000157818 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_88 | 6 | 7 | 4.52536e-16 |
| Malus domestica | Chr16 | 6 | CH_mdo_1320 | 2 | 2 | 0.000568817 |
| Malus domestica | Chr15 | 6 | CH_mdo_421 | 3 | 3 | 0.0000000431413 |
| Marchantia polymorpha | scaffold_85 | 6 | CH_mpo_153 | 2 | 2 | 0.000110442 |
| Medicago truncatula | chr3 | 6 | CH_mtr_205 | 5 | 6 | 0.0000000000000592439 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_249 | 3 | 6 | 0.0000000836696 |
| Prunus persica | Pp01 | 6 | CH_ppe_280 | 3 | 3 | 0.00000000834721 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_149 | 3 | 3 | 0.00000000408165 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_1035 | 2 | 2 | 0.000225294 |
| Quercus lobata | 5 | 6 | CH_qlo_1722 | 2 | 2 | 0.000516289 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_609 | 3 | 3 | 0.000000200248 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_692 | 3 | 4 | 0.000000800904 |
| Rhododendron simsii | chr08 | 6 | CH_rsi_486 | 3 | 5 | 0.00000124904 |
| Simmondsia chinensis | GWHAASQ00000023 | 6 | CH_sci_306 | 2 | 2 | 0.0000851426 |
| Sechium edule | LG03 | 6 | CH_sed_466 | 2 | 2 | 0.000428052 |
| Trochodendron aralioides | group10 | 6 | CH_tar_163 | 3 | 3 | 0.00000000540676 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_161 | 3 | 3 | 0.00000000859546 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_184 | 3 | 3 | 0.0000000518115 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |